Variant report

Variant	rs11626594
Chromosome Location	chr14:68351339-68351340
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:68350274-68351344	A549	lung:	n/a	chr14:68350636-68350654 chr14:68350641-68350649 chr14:68350637-68350653 chr14:68350638-68350659
2	CTCF	chr14:68351220-68351370	SAEC	small airway:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68350452..68352881-chr14:69258194..69261622,3	MCF-7	breast:

Variant related genes	Relation type
RAD51B	TF binding region
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10130919	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10131048	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10132022	0.84[GIH][hapmap]
rs10132318	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10133239	0.85[ASN][1000 genomes]
rs10133262	0.83[GIH][hapmap]
rs10137614	0.85[ASN][1000 genomes]
rs10137930	0.85[ASN][1000 genomes]
rs10143455	0.84[GIH][hapmap]
rs10146380	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10148527	0.96[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1015023	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873208	0.85[ASN][1000 genomes]
rs11158693	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158695	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158697	0.85[ASN][1000 genomes]
rs11158700	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11158701	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11158719	0.81[GIH][hapmap]
rs11622521	0.85[ASN][1000 genomes]
rs11622535	0.85[ASN][1000 genomes]
rs11623355	0.84[GIH][hapmap]
rs11623467	0.81[GIH][hapmap]
rs11623756	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11624166	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626332	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11626778	0.85[ASN][1000 genomes]
rs11627100	0.85[ASN][1000 genomes]
rs11627417	0.85[ASN][1000 genomes]
rs11627565	0.85[ASN][1000 genomes]
rs11844492	0.85[ASN][1000 genomes]
rs11846344	0.84[GIH][hapmap]
rs11847628	0.81[GIH][hapmap];0.94[MEX][hapmap]
rs11850191	0.84[GIH][hapmap]
rs12431490	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12431697	0.84[GIH][hapmap]
rs12432558	0.85[CEU][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12434751	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12437178	0.84[GIH][hapmap]
rs12586329	0.81[ASN][1000 genomes]
rs12588401	0.81[ASN][1000 genomes]
rs12886915	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12891047	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12892221	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12896666	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17104681	0.88[CHD][hapmap]
rs17104700	0.88[CHD][hapmap]
rs17104889	0.81[GIH][hapmap]
rs17783124	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17783160	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs181563	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs181566	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs181575	0.81[ASW][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap]
rs1950767	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1950769	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955470	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1956345	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1956347	0.85[ASN][1000 genomes]
rs1956348	0.85[ASN][1000 genomes]
rs1980654	0.86[GIH][hapmap]
rs28373844	0.85[ASN][1000 genomes]
rs28604984	0.85[ASN][1000 genomes]
rs28623567	0.85[ASN][1000 genomes]
rs28713367	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2874131	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28855496	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3742884	0.88[CHD][hapmap]
rs4569184	0.81[ASW][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap]
rs4902517	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4902518	0.81[ASN][1000 genomes]
rs4902519	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4902533	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4902536	0.84[GIH][hapmap]
rs4902538	0.84[GIH][hapmap]
rs55999745	0.85[ASN][1000 genomes]
rs7143521	0.88[CHD][hapmap]
rs7150705	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7150860	0.88[CHD][hapmap]
rs7150903	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7151091	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7151495	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7154635	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7154646	0.84[GIH][hapmap]
rs7157288	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159109	0.85[ASN][1000 genomes]
rs72725127	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs764088	0.85[EUR][1000 genomes]
rs767972	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8003431	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8006089	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs8009358	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009455	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011393	1.00[JPT][hapmap]
rs8014000	0.81[GIH][hapmap]
rs8017007	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017013	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8018709	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8020795	0.84[GIH][hapmap]
rs932554	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs932555	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs961700	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs986382	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
5	chr14:68342400-68351800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:68343800-68356400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:68345400-68353000	Weak transcription	Fetal Intestine Small	intestine
8	chr14:68347600-68351400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:68348000-68351400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:68348200-68363800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:68348400-68351400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr14:68348400-68351800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:68348400-68353000	Weak transcription	Lung	lung
14	chr14:68348400-68353800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:68348400-68354000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr14:68348800-68354400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:68349000-68355000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr14:68349800-68351600	Enhancers	Primary hematopoietic stem cells	blood
19	chr14:68350000-68359600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:68350400-68351600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:68350600-68351400	Enhancers	Fetal Kidney	kidney
22	chr14:68350600-68351800	Enhancers	A549	lung
23	chr14:68350800-68351400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr14:68350800-68351400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:68350800-68351600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr14:68350800-68351800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:68350800-68351800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:68350800-68351800	Enhancers	Fetal Lung	lung
29	chr14:68350800-68352000	Enhancers	Primary T cells from cord blood	blood
30	chr14:68350800-68352200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:68351000-68351400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr14:68351000-68351400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr14:68351000-68351400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:68351000-68351400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr14:68351000-68351400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr14:68351000-68351400	Enhancers	Fetal Muscle Leg	muscle
37	chr14:68351000-68351400	Enhancers	Fetal Stomach	stomach
38	chr14:68351000-68351400	Enhancers	Ovary	ovary
39	chr14:68351000-68351400	Enhancers	Rectal Smooth Muscle	rectum
40	chr14:68351000-68351600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:68351000-68351600	Enhancers	Colon Smooth Muscle	Colon
42	chr14:68351000-68351600	Enhancers	HUVEC	blood vessel
43	chr14:68351200-68351400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:68351200-68351800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr14:68351200-68359200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:68351200-68363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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