Variant report

Variant	rs7159109
Chromosome Location	chr14:68284240-68284241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:68284139-68284508	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:68282145..68286888-chr14:69256784..69261104,5	MCF-7	breast:
2	chr14:68193596..68197336-chr14:68281825..68284541,3	MCF-7	breast:
3	chr14:68281912..68284483-chr14:68287348..68290974,3	K562	blood:

Variant related genes	Relation type
ZFYVE26	TF binding region
RAD51B	TF binding region
ENSG00000182185	Chromatin interaction
ENSG00000139988	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10130919	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10131048	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10132318	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10133239	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135927	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10137614	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141638	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10146380	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150007	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1015023	0.85[ASN][1000 genomes]
rs1040598	0.86[AMR][1000 genomes]
rs10483805	0.80[EUR][1000 genomes]
rs10873208	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158693	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158694	0.86[AMR][1000 genomes]
rs11158695	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158697	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158700	0.81[AMR][1000 genomes]
rs11158701	0.81[AMR][1000 genomes]
rs11620947	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11621019	0.81[EUR][1000 genomes]
rs11622521	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622535	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623756	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624166	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11626332	0.84[AMR][1000 genomes]
rs11626590	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11626594	0.85[ASN][1000 genomes]
rs11626769	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11626778	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627100	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627417	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627565	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844492	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847628	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12433710	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12586329	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12588401	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12886915	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12891047	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12891164	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12892221	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12893157	0.86[AMR][1000 genomes]
rs12896666	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543391	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17783094	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17783124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783160	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810523	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181561	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs181562	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs181563	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181564	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs181565	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs181566	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs181567	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs181570	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs181572	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs181574	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs181575	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs181576	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1950769	0.85[ASN][1000 genomes]
rs1955470	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1956345	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956346	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1956347	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956348	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964828	0.85[AMR][1000 genomes]
rs2235962	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2235963	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2235965	0.82[AMR][1000 genomes]
rs2235966	0.83[AMR][1000 genomes]
rs2295106	0.85[AMR][1000 genomes]
rs2295107	0.85[AMR][1000 genomes]
rs2331403	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28373844	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28623567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874131	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2874132	0.82[AMR][1000 genomes]
rs35272075	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4143685	0.86[AMR][1000 genomes]
rs4284565	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4402486	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4569184	0.80[EUR][1000 genomes]
rs4902517	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902518	0.95[ASN][1000 genomes]
rs4902519	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55999745	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142433	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7143496	0.87[AMR][1000 genomes]
rs7149482	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7151091	0.88[ASN][1000 genomes]
rs7151495	0.86[AMR][1000 genomes]
rs7154635	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157288	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7159489	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7159622	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7159982	0.80[EUR][1000 genomes]
rs7160196	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72723196	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72725103	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725114	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs764088	0.82[AMR][1000 genomes]
rs767972	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8003431	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004611	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8006089	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8009358	0.85[ASN][1000 genomes]
rs8009455	0.85[ASN][1000 genomes]
rs8010086	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8011120	0.87[AMR][1000 genomes]
rs8011690	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8012974	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8017007	0.85[ASN][1000 genomes]
rs8017013	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018709	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932554	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs932555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961700	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs986382	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68282400-68284400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr14:68282600-68284400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:68283600-68284400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr14:68283600-68284400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:68283600-68284600	Enhancers	Spleen	Spleen
6	chr14:68283600-68286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:68283800-68284400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:68283800-68284400	Flanking Active TSS	Liver	Liver
9	chr14:68283800-68284400	Flanking Active TSS	GM12878-XiMat	blood
10	chr14:68283800-68284600	Flanking Active TSS	Dnd41	blood
11	chr14:68283800-68286200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:68283800-68286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:68283800-68286400	Weak transcription	Lung	lung
14	chr14:68283800-68286400	Weak transcription	Small Intestine	intestine
15	chr14:68284000-68284400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:68284000-68284400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:68284000-68284400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr14:68284000-68284400	Enhancers	Fetal Brain Male	brain
19	chr14:68284000-68284400	Enhancers	Fetal Muscle Trunk	muscle
20	chr14:68284000-68284400	Enhancers	Fetal Muscle Leg	muscle
21	chr14:68284000-68284400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr14:68284000-68284400	Flanking Active TSS	HepG2	liver
23	chr14:68284000-68284600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:68284000-68284600	Enhancers	Primary B cells from peripheral blood	blood
25	chr14:68284000-68284600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:68284000-68284600	Enhancers	Primary hematopoietic stem cells	blood
27	chr14:68284000-68285800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr14:68284000-68285800	Weak transcription	Ovary	ovary
29	chr14:68284000-68285800	Weak transcription	Psoas Muscle	Psoas
30	chr14:68284000-68285800	Weak transcription	Right Atrium	heart
31	chr14:68284000-68285800	Weak transcription	Right Ventricle	heart
32	chr14:68284000-68285800	Weak transcription	HSMMtube	muscle
33	chr14:68284000-68286000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:68284000-68286000	Weak transcription	Brain Hippocampus Middle	brain
35	chr14:68284000-68286000	Weak transcription	HSMM	muscle
36	chr14:68284000-68286000	Weak transcription	NHLF	lung
37	chr14:68284000-68286200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:68284000-68286200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:68284000-68286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:68284000-68286200	Weak transcription	Esophagus	oesophagus
41	chr14:68284000-68286200	Weak transcription	Fetal Lung	lung
42	chr14:68284000-68286200	Weak transcription	Stomach Mucosa	stomach
43	chr14:68284000-68286200	Weak transcription	HMEC	breast
44	chr14:68284000-68286200	Weak transcription	NHDF-Ad	bronchial
45	chr14:68284000-68286400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr14:68284000-68286400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr14:68284000-68286400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr14:68284000-68286400	Weak transcription	Aorta	Aorta
49	chr14:68284000-68286400	Weak transcription	Gastric	stomach
50	chr14:68284200-68284400	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links