Variant report

Variant	rs7159489
Chromosome Location	chr14:68284401-68284402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:68284139-68284508	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:68282145..68286888-chr14:69256784..69261104,5	MCF-7	breast:
2	chr14:68193596..68197336-chr14:68281825..68284541,3	MCF-7	breast:
3	chr14:68281912..68284483-chr14:68287348..68290974,3	K562	blood:

Variant related genes	Relation type
RAD51B	TF binding region
ZFYVE26	TF binding region
ENSG00000182185	Chromatin interaction
ENSG00000139988	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10130919	0.86[AMR][1000 genomes]
rs10133239	0.86[AMR][1000 genomes]
rs10135927	0.81[AMR][1000 genomes]
rs10137614	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10137930	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10141638	0.81[AMR][1000 genomes]
rs10146380	0.84[AMR][1000 genomes]
rs10873208	0.86[AMR][1000 genomes]
rs11158697	0.86[AMR][1000 genomes]
rs11620947	0.81[AMR][1000 genomes]
rs11622521	0.90[AMR][1000 genomes]
rs11622535	0.84[AMR][1000 genomes]
rs11623756	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11626769	0.82[AMR][1000 genomes]
rs11626778	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11627100	0.86[AMR][1000 genomes]
rs11627417	0.86[AMR][1000 genomes]
rs11627565	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11844492	0.86[AMR][1000 genomes]
rs17783094	0.82[AMR][1000 genomes]
rs17783124	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17783160	0.86[AMR][1000 genomes]
rs181563	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1956345	0.86[AMR][1000 genomes]
rs1956346	0.81[AMR][1000 genomes]
rs1956347	0.86[AMR][1000 genomes]
rs1956348	0.86[AMR][1000 genomes]
rs28373844	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28604984	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28623567	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35272075	0.81[AMR][1000 genomes]
rs4284565	0.84[AMR][1000 genomes]
rs4402486	0.81[AMR][1000 genomes]
rs55999745	0.86[AMR][1000 genomes]
rs7149482	0.82[AMR][1000 genomes]
rs7154635	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7159109	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72723196	0.82[AMR][1000 genomes]
rs72725103	0.82[AMR][1000 genomes]
rs72725114	0.81[AMR][1000 genomes]
rs8003431	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8004611	0.83[AMR][1000 genomes]
rs8006089	0.82[AMR][1000 genomes]
rs8012974	0.82[AMR][1000 genomes]
rs8017013	0.86[AMR][1000 genomes]
rs8018709	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs932554	0.85[AFR][1000 genomes]
rs932555	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68283600-68284600	Enhancers	Spleen	Spleen
2	chr14:68283600-68286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:68283800-68284600	Flanking Active TSS	Dnd41	blood
4	chr14:68283800-68286200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:68283800-68286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:68283800-68286400	Weak transcription	Lung	lung
7	chr14:68283800-68286400	Weak transcription	Small Intestine	intestine
8	chr14:68284000-68284600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:68284000-68284600	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:68284000-68284600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr14:68284000-68284600	Enhancers	Primary hematopoietic stem cells	blood
12	chr14:68284000-68285800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:68284000-68285800	Weak transcription	Ovary	ovary
14	chr14:68284000-68285800	Weak transcription	Psoas Muscle	Psoas
15	chr14:68284000-68285800	Weak transcription	Right Atrium	heart
16	chr14:68284000-68285800	Weak transcription	Right Ventricle	heart
17	chr14:68284000-68285800	Weak transcription	HSMMtube	muscle
18	chr14:68284000-68286000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr14:68284000-68286000	Weak transcription	Brain Hippocampus Middle	brain
20	chr14:68284000-68286000	Weak transcription	HSMM	muscle
21	chr14:68284000-68286000	Weak transcription	NHLF	lung
22	chr14:68284000-68286200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:68284000-68286200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:68284000-68286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr14:68284000-68286200	Weak transcription	Esophagus	oesophagus
26	chr14:68284000-68286200	Weak transcription	Fetal Lung	lung
27	chr14:68284000-68286200	Weak transcription	Stomach Mucosa	stomach
28	chr14:68284000-68286200	Weak transcription	HMEC	breast
29	chr14:68284000-68286200	Weak transcription	NHDF-Ad	bronchial
30	chr14:68284000-68286400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr14:68284000-68286400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:68284000-68286400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:68284000-68286400	Weak transcription	Aorta	Aorta
34	chr14:68284000-68286400	Weak transcription	Gastric	stomach
35	chr14:68284200-68284600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:68284200-68284600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:68284200-68284600	Weak transcription	Placenta	Placenta
38	chr14:68284200-68284600	Enhancers	Thymus	Thymus
39	chr14:68284200-68284600	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr14:68284200-68284800	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr14:68284200-68284800	Enhancers	Stomach Smooth Muscle	stomach
42	chr14:68284200-68285000	Enhancers	Fetal Intestine Large	intestine
43	chr14:68284200-68285600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:68284200-68285600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:68284200-68285600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:68284200-68285600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:68284200-68285600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:68284200-68285600	Weak transcription	Adipose Nuclei	Adipose
49	chr14:68284200-68285600	Weak transcription	A549	lung
50	chr14:68284200-68285800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links