Variant report

Variant	rs7157288
Chromosome Location	chr14:68325985-68325986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68324608..68326909-chr14:69260185..69262746,3	MCF-7	breast:
2	chr14:68315532..68317270-chr14:68325905..68327762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10130919	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10131048	0.83[ASN][1000 genomes]
rs10132318	0.83[ASN][1000 genomes]
rs10133239	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10137614	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10137930	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10146380	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10148527	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1015023	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873208	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11158693	0.83[ASN][1000 genomes]
rs11158695	0.83[ASN][1000 genomes]
rs11158697	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11158700	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158701	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11620947	0.87[AMR][1000 genomes]
rs11622521	0.88[ASN][1000 genomes]
rs11622535	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11623756	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11624166	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626332	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11626594	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626778	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11627100	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11627417	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11627565	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11844492	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11847628	0.82[AMR][1000 genomes]
rs12431490	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12432558	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs12434751	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12586329	0.83[ASN][1000 genomes]
rs12588401	0.83[ASN][1000 genomes]
rs12886915	0.83[ASN][1000 genomes]
rs12891047	0.83[ASN][1000 genomes]
rs12892221	0.83[ASN][1000 genomes]
rs12896666	0.83[ASN][1000 genomes]
rs17783124	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17783160	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs181563	0.88[ASN][1000 genomes]
rs181566	0.85[ASN][1000 genomes]
rs181572	0.84[AMR][1000 genomes]
rs1950767	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1950769	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1955470	0.83[ASN][1000 genomes]
rs1956345	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1956346	0.87[AMR][1000 genomes]
rs1956347	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1956348	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28373844	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28604984	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28623567	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28713367	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2874131	0.83[ASN][1000 genomes]
rs28855496	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4402486	0.84[AMR][1000 genomes]
rs4902517	0.83[ASN][1000 genomes]
rs4902518	0.83[ASN][1000 genomes]
rs4902519	0.83[ASN][1000 genomes]
rs4902533	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55999745	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7150705	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs7150903	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs7151091	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151495	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7154635	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7159109	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7160196	0.84[AMR][1000 genomes]
rs72725127	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs764088	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs767972	0.83[ASN][1000 genomes]
rs8003431	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8006089	0.86[AMR][1000 genomes]
rs8009358	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009455	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010086	0.82[AMR][1000 genomes]
rs8011690	0.87[AMR][1000 genomes]
rs8017007	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8017013	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8018709	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs932554	0.88[ASN][1000 genomes]
rs932555	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs961700	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986382	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:68303200-68331800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:68313200-68326400	Weak transcription	Pancreas	Pancrea
4	chr14:68313200-68333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:68313200-68333800	Weak transcription	Primary T cells from cord blood	blood
6	chr14:68314000-68331400	Weak transcription	Dnd41	blood
7	chr14:68318600-68334400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:68319000-68327600	Weak transcription	Ovary	ovary
9	chr14:68319200-68326400	Weak transcription	Spleen	Spleen
10	chr14:68319200-68334200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr14:68320800-68338600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:68321000-68334000	Weak transcription	Primary B cells from cord blood	blood
13	chr14:68321200-68334400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:68321400-68334200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:68322400-68332600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr14:68322600-68334800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:68324000-68335600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:68324600-68332400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:68324600-68333800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr14:68325000-68326000	Enhancers	Stomach Mucosa	stomach
22	chr14:68325000-68334400	Weak transcription	Fetal Intestine Small	intestine
23	chr14:68325200-68326600	Enhancers	HUVEC	blood vessel
24	chr14:68325200-68331800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:68325600-68334800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:68325800-68326000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:68325800-68326400	Enhancers	GM12878-XiMat	blood

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