Variant report

Variant	rs1950769
Chromosome Location	chr14:68354542-68354543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68354393..68357388-chr14:69863254..69865122,2	MCF-7	breast:
2	chr14:68352272..68355022-chr14:69258244..69262334,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10130919	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10131048	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10132022	0.84[GIH][hapmap]
rs10132318	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10133239	0.85[ASN][1000 genomes]
rs10133262	0.83[GIH][hapmap]
rs10137614	0.85[ASN][1000 genomes]
rs10137930	0.85[ASN][1000 genomes]
rs10143455	0.84[GIH][hapmap]
rs10146380	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10148527	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1015023	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873208	0.85[ASN][1000 genomes]
rs11158693	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158695	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158697	0.85[ASN][1000 genomes]
rs11158700	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158701	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158719	0.81[GIH][hapmap]
rs11622521	0.85[ASN][1000 genomes]
rs11622535	0.85[ASN][1000 genomes]
rs11623355	0.84[GIH][hapmap]
rs11623467	0.81[GIH][hapmap]
rs11623756	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11624166	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626332	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11626594	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626778	0.85[ASN][1000 genomes]
rs11627100	0.85[ASN][1000 genomes]
rs11627417	0.85[ASN][1000 genomes]
rs11627565	0.85[ASN][1000 genomes]
rs11844492	0.85[ASN][1000 genomes]
rs11846344	0.84[GIH][hapmap]
rs11847628	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs11850191	0.84[GIH][hapmap]
rs12431490	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12431697	0.84[GIH][hapmap]
rs12432558	0.89[CEU][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12434751	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12437178	0.84[GIH][hapmap]
rs12586329	0.81[ASN][1000 genomes]
rs12588401	0.81[ASN][1000 genomes]
rs12886915	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12891047	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12892221	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12896666	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17104681	0.88[CHD][hapmap]
rs17104700	0.88[CHD][hapmap]
rs17104889	0.81[GIH][hapmap]
rs17783124	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17783160	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs181563	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs181566	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs181575	0.81[GIH][hapmap];0.87[MEX][hapmap]
rs1950767	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1955470	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1956345	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1956347	0.85[ASN][1000 genomes]
rs1956348	0.85[ASN][1000 genomes]
rs1980654	0.86[GIH][hapmap]
rs28373844	0.85[ASN][1000 genomes]
rs28604984	0.85[ASN][1000 genomes]
rs28623567	0.85[ASN][1000 genomes]
rs28713367	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2874131	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28855496	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3742884	0.88[CHD][hapmap]
rs4569184	0.87[MEX][hapmap]
rs4902517	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4902518	0.81[ASN][1000 genomes]
rs4902519	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4902533	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902536	0.84[GIH][hapmap]
rs4902538	0.84[GIH][hapmap]
rs55999745	0.85[ASN][1000 genomes]
rs7143521	0.88[CHD][hapmap]
rs7150705	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7150860	0.88[CHD][hapmap]
rs7150903	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151091	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7151495	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs7154635	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7154646	0.84[GIH][hapmap]
rs7157288	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159109	0.85[ASN][1000 genomes]
rs72725127	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs764088	0.88[EUR][1000 genomes]
rs767972	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8003431	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8006089	0.81[GIH][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap]
rs8009358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009455	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011393	1.00[JPT][hapmap]
rs8014000	0.81[GIH][hapmap]
rs8017007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017013	0.86[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8018709	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8020795	0.84[GIH][hapmap]
rs932554	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs932555	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs961700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs986382	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518669	chr14:68354542-68362510	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
5	chr14:68343800-68356400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:68348200-68363800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:68349000-68355000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr14:68350000-68359600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:68351200-68359200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:68351200-68363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:68351400-68355000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr14:68351400-68356200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:68351400-68356400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:68351400-68357600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:68351400-68359200	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:68351400-68361000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:68351400-68367600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:68351400-68367800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:68351600-68357000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:68351600-68367400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr14:68351800-68354800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:68352000-68367600	Weak transcription	Primary T cells from cord blood	blood
23	chr14:68352400-68354800	Enhancers	Fetal Intestine Large	intestine
24	chr14:68352800-68359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:68353600-68355600	Active TSS	Ovary	ovary
26	chr14:68353600-68358000	Weak transcription	Fetal Intestine Small	intestine
27	chr14:68354000-68354600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr14:68354000-68354800	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:68354400-68354600	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr14:68354400-68354600	Enhancers	Fetal Kidney	kidney
31	chr14:68354400-68354600	Enhancers	Fetal Stomach	stomach

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