Variant report

Variant	rs10150007
Chromosome Location	chr14:68296065-68296066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10130919	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10133239	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10135927	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137614	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10137930	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10141638	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10146380	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1040598	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10873208	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158694	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11158697	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158700	0.81[AMR][1000 genomes]
rs11158701	0.81[AMR][1000 genomes]
rs11620947	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11621019	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622521	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11622535	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11623756	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11626590	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626769	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626778	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11627100	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11627417	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11627565	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11844492	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11847628	0.89[EUR][1000 genomes]
rs12433710	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12891164	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893157	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1543391	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783094	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783124	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17783160	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1810523	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181561	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181562	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181563	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181564	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181565	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181566	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs181567	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181570	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181572	0.82[EUR][1000 genomes]
rs181574	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181575	0.80[EUR][1000 genomes]
rs181576	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956345	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1956346	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1956347	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1956348	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1964828	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2235967	1.00[ASN][1000 genomes]
rs2295105	0.80[ASN][1000 genomes]
rs2295106	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2295107	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2331403	0.85[EUR][1000 genomes]
rs28373844	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28604984	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28623567	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2874132	1.00[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35272075	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4143685	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4284565	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402486	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55854324	1.00[ASN][1000 genomes]
rs55867043	0.87[ASN][1000 genomes]
rs55999745	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7142433	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143196	1.00[ASN][1000 genomes]
rs7143496	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7149482	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151495	0.84[AMR][1000 genomes]
rs7154635	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7159109	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7159622	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159982	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723196	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723202	1.00[ASN][1000 genomes]
rs72725103	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725114	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs764088	0.82[AMR][1000 genomes]
rs8003431	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8004611	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006089	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8010086	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8011120	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8011690	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8012974	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017013	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8018709	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs932555	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287200-68303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:68287400-68296400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:68287400-68297200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:68287400-68304800	Weak transcription	Lung	lung
5	chr14:68287400-68312800	Weak transcription	Aorta	Aorta
6	chr14:68287400-68312800	Weak transcription	Esophagus	oesophagus
7	chr14:68287400-68315200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:68287600-68298000	Weak transcription	Brain Anterior Caudate	brain
9	chr14:68287600-68301400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:68287600-68302800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:68287600-68303600	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:68287600-68303800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:68287600-68304800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:68287600-68306000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
16	chr14:68287800-68296200	Weak transcription	Brain Substantia Nigra	brain
17	chr14:68287800-68300600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:68287800-68304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:68287800-68305000	Weak transcription	Fetal Kidney	kidney
20	chr14:68287800-68306400	Weak transcription	Fetal Lung	lung
21	chr14:68287800-68310600	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:68288000-68297200	Weak transcription	Primary T cells from cord blood	blood
24	chr14:68288000-68298800	Weak transcription	Adipose Nuclei	Adipose
25	chr14:68288000-68300200	Weak transcription	NHEK	skin
26	chr14:68288000-68306400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:68288000-68306400	Weak transcription	HepG2	liver
28	chr14:68288000-68306800	Weak transcription	A549	lung
29	chr14:68288200-68298200	Weak transcription	HMEC	breast
30	chr14:68288200-68302400	Weak transcription	GM12878-XiMat	blood
31	chr14:68288200-68304000	Weak transcription	K562	blood
32	chr14:68288200-68306200	Weak transcription	NHDF-Ad	bronchial
33	chr14:68288400-68298200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr14:68288400-68303800	Weak transcription	Liver	Liver
35	chr14:68289600-68304800	Weak transcription	Fetal Intestine Large	intestine
36	chr14:68291400-68312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:68291600-68303200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:68292200-68300400	Weak transcription	Left Ventricle	heart
39	chr14:68293800-68300200	Weak transcription	Primary B cells from cord blood	blood
40	chr14:68293800-68301800	Weak transcription	Fetal Intestine Small	intestine
41	chr14:68293800-68302400	Weak transcription	Thymus	Thymus
42	chr14:68294000-68303000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr14:68294200-68300400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:68294200-68304600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr14:68294200-68315000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr14:68294200-68316600	Weak transcription	Placenta	Placenta
47	chr14:68294400-68303200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr14:68294400-68304400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr14:68294400-68304600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr14:68294400-68306400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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