Variant report

Variant	rs10146831
Chromosome Location	chr14:68422409-68422410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68421784..68424768-chr14:69261099..69262609,2	MCF-7	breast:
2	chr14:68421973..68423827-chr14:68427831..68430773,2	K562	blood:
3	chr14:68421406..68425336-chr14:68430124..68433413,6	MCF-7	breast:
4	chr14:68422080..68424333-chr14:69258216..69260851,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 215 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:214)

rs_ID	r²[population]
rs10130605	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10133262	0.88[JPT][hapmap]
rs10133485	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134124	0.88[JPT][hapmap]
rs10134320	0.86[JPT][hapmap]
rs10134664	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs10134988	0.85[EUR][1000 genomes]
rs10135046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs10135256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes]
rs10135316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs10135925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136129	0.89[JPT][hapmap]
rs10136790	0.89[JPT][hapmap]
rs10137457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10140465	0.88[AFR][1000 genomes]
rs10141018	0.86[JPT][hapmap]
rs10142285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143843	0.89[JPT][hapmap]
rs10143895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144224	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes]
rs10145197	0.88[JPT][hapmap]
rs10145820	0.81[AFR][1000 genomes]
rs10145884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	1.00[ASN][1000 genomes]
rs10146189	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10146719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147311	0.86[JPT][hapmap]
rs10147569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10147820	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10148527	0.89[JPT][hapmap]
rs10148893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150584	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10150789	0.89[AFR][1000 genomes]
rs10151123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10450891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11158720	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11158721	0.86[JPT][hapmap]
rs1118397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625742	1.00[CEU][hapmap]
rs11844529	0.88[JPT][hapmap]
rs11844842	0.88[JPT][hapmap]
rs11846344	0.88[JPT][hapmap]
rs11847339	0.88[JPT][hapmap]
rs11850191	0.88[JPT][hapmap]
rs11851991	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11852180	0.88[JPT][hapmap]
rs12100584	0.88[JPT][hapmap]
rs12431697	0.88[JPT][hapmap]
rs17104681	1.00[CEU][hapmap]
rs17104689	1.00[CEU][hapmap]
rs17104700	1.00[CEU][hapmap]
rs17104758	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104764	0.89[JPT][hapmap]
rs17104774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104776	0.89[JPT][hapmap]
rs17104783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104800	0.89[JPT][hapmap]
rs17104823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17104824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs17104900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs17104917	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17104947	0.88[JPT][hapmap]
rs17104953	0.84[JPT][hapmap]
rs17104992	0.88[JPT][hapmap]
rs17105001	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs17783202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1951411	0.86[JPT][hapmap]
rs1955469	1.00[CEU][hapmap]
rs2057361	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2180537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396172	0.85[EUR][1000 genomes]
rs28405326	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28434770	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448732	0.85[AFR][1000 genomes]
rs28473357	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28516665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	1.00[ASN][1000 genomes]
rs28751961	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28757308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877369	0.88[JPT][hapmap]
rs28816808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28835585	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28847917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28869007	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700596	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs3742882	1.00[CEU][hapmap]
rs3742883	1.00[CEU][hapmap]
rs3742885	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs4436722	0.88[JPT][hapmap]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899229	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902523	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs4902525	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4902529	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902530	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902531	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4902532	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902534	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902535	0.88[JPT][hapmap]
rs4902536	0.88[JPT][hapmap]
rs4902537	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902538	0.88[JPT][hapmap]
rs4902540	0.88[JPT][hapmap]
rs4902541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902548	0.86[JPT][hapmap]
rs4902550	0.86[JPT][hapmap]
rs60014063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6573815	0.86[JPT][hapmap]
rs6573816	0.86[JPT][hapmap]
rs7140987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141203	1.00[CEU][hapmap]
rs7142112	0.89[JPT][hapmap]
rs7142210	0.89[JPT][hapmap]
rs7143521	1.00[CEU][hapmap]
rs7146354	0.89[JPT][hapmap]
rs7147296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147522	0.86[JPT][hapmap]
rs7147935	0.86[JPT][hapmap]
rs7148799	0.86[JPT][hapmap]
rs7149122	0.84[EUR][1000 genomes]
rs7149343	0.86[JPT][hapmap]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149796	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150716	0.85[JPT][hapmap]
rs7150860	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154228	0.86[JPT][hapmap]
rs7154645	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7154646	0.88[JPT][hapmap]
rs7154725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7155097	0.88[JPT][hapmap]
rs7155840	0.88[JPT][hapmap]
rs7156492	1.00[CEU][hapmap]
rs7157152	0.84[JPT][hapmap]
rs7157185	0.88[JPT][hapmap]
rs7157550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[ASN][1000 genomes]
rs73284210	0.98[ASN][1000 genomes]
rs7359083	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs8003181	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007347	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs8007989	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs8008791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012493	0.86[JPT][hapmap]
rs8012665	1.00[CEU][hapmap]
rs8014844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	1.00[EUR][1000 genomes]
rs8015595	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs8015741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016525	0.89[JPT][hapmap]
rs8016563	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	1.00[EUR][1000 genomes]
rs8017930	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes]
rs8018883	1.00[EUR][1000 genomes]
rs8019420	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323501	0.88[JPT][hapmap]
rs932475	1.00[CEU][hapmap]
rs957930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9672142	0.86[JPT][hapmap]
rs9788517	1.00[CEU][hapmap]
rs9796374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
3	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
6	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
7	chr14:68417400-68428200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:68419600-68424800	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:68420000-68424800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:68420200-68423600	Weak transcription	Fetal Stomach	stomach
11	chr14:68420400-68427400	Weak transcription	Ovary	ovary
12	chr14:68420800-68428200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:68422200-68423600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links