Variant report

Variant	rs3742882
Chromosome Location	chr14:68227897-68227898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10133485	1.00[CEU][hapmap]
rs10133652	1.00[CEU][hapmap]
rs10135925	1.00[CEU][hapmap]
rs10137712	1.00[CEU][hapmap]
rs10145884	1.00[CEU][hapmap]
rs10146766	1.00[CEU][hapmap]
rs10146831	1.00[CEU][hapmap]
rs10148893	1.00[CEU][hapmap]
rs10450891	1.00[CEU][hapmap]
rs1118397	1.00[CEU][hapmap]
rs11623700	0.81[MEX][hapmap]
rs11623785	0.89[YRI][hapmap]
rs11623961	0.85[YRI][hapmap]
rs11625742	1.00[CEU][hapmap]
rs12050393	0.81[MEX][hapmap]
rs1555193	0.81[MEX][hapmap];0.89[YRI][hapmap]
rs17104681	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17104689	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17104700	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs17104774	1.00[CEU][hapmap]
rs17104783	1.00[CEU][hapmap]
rs17104786	1.00[CEU][hapmap]
rs17104793	1.00[CEU][hapmap]
rs17104796	1.00[CEU][hapmap]
rs17104799	1.00[CEU][hapmap]
rs17783202	1.00[CEU][hapmap]
rs1812250	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1955469	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1961561	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2180537	1.00[CEU][hapmap]
rs2320029	0.81[MEX][hapmap];0.89[YRI][hapmap]
rs34663731	0.82[EUR][1000 genomes]
rs34768780	0.82[EUR][1000 genomes]
rs34935709	0.82[EUR][1000 genomes]
rs35588855	0.82[EUR][1000 genomes]
rs35927243	0.82[EUR][1000 genomes]
rs3742880	0.81[MEX][hapmap]
rs3742883	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3742884	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs3742885	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs4899222	0.81[MEX][hapmap];0.89[YRI][hapmap]
rs4899229	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4902523	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs4902530	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4902531	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6573790	0.85[LWK][hapmap];0.81[MEX][hapmap];0.88[YRI][hapmap]
rs6573802	1.00[CEU][hapmap]
rs7141203	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7143377	0.82[EUR][1000 genomes]
rs7143521	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7147296	1.00[CEU][hapmap]
rs7149351	0.82[EUR][1000 genomes]
rs7149356	0.82[EUR][1000 genomes]
rs7149460	1.00[CEU][hapmap]
rs7149796	1.00[CEU][hapmap]
rs7150860	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7156492	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7157720	1.00[CEU][hapmap]
rs7159786	0.82[EUR][1000 genomes]
rs742867	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs761513	0.81[MEX][hapmap]
rs8006175	1.00[CEU][hapmap]
rs8007989	1.00[CEU][hapmap]
rs8008791	1.00[CEU][hapmap]
rs8012665	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs8013767	0.81[MEX][hapmap]
rs8015595	1.00[CEU][hapmap]
rs8015741	1.00[CEU][hapmap]
rs8017930	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs8020512	1.00[CEU][hapmap]
rs932474	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs932475	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9652362	1.00[CEU][hapmap]
rs9652363	1.00[CEU][hapmap]
rs9652364	1.00[CEU][hapmap]
rs9788517	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9796374	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68202800-68230800	Weak transcription	Right Atrium	heart
2	chr14:68206200-68251000	Weak transcription	K562	blood
3	chr14:68211600-68230800	Weak transcription	Stomach Mucosa	stomach
4	chr14:68212400-68282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:68212800-68229800	Strong transcription	Fetal Intestine Large	intestine
6	chr14:68213000-68229800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr14:68213000-68233000	Strong transcription	Primary hematopoietic stem cells	blood
8	chr14:68213000-68233000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:68213000-68280800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68213200-68229800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr14:68213200-68243200	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:68213400-68281200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:68213600-68229200	Strong transcription	Placenta	Placenta
14	chr14:68213600-68279600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:68213800-68228800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:68213800-68237000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:68213800-68280600	Strong transcription	Liver	Liver
18	chr14:68214000-68232000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:68214000-68258200	Strong transcription	Brain Germinal Matrix	brain
20	chr14:68214600-68232800	Strong transcription	Primary B cells from peripheral blood	blood
21	chr14:68214600-68281000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:68214800-68266800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:68214800-68276200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr14:68214800-68280200	Strong transcription	Fetal Thymus	thymus
25	chr14:68216600-68267200	Strong transcription	Fetal Stomach	stomach
26	chr14:68218600-68236400	Strong transcription	GM12878-XiMat	blood
27	chr14:68220000-68251200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr14:68220200-68232800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:68220200-68273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:68220400-68228200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr14:68221600-68233800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:68221800-68229000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr14:68222400-68230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr14:68223800-68257600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr14:68224200-68244000	Strong transcription	Fetal Muscle Leg	muscle
36	chr14:68224800-68281000	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr14:68225000-68281000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:68225400-68242600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:68225600-68229800	Strong transcription	Fetal Intestine Small	intestine
40	chr14:68225800-68229800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr14:68226000-68228200	Strong transcription	Fetal Brain Male	brain
42	chr14:68226000-68248800	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr14:68226000-68257600	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr14:68226200-68228600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:68226200-68228800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:68226200-68230000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr14:68226200-68230600	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr14:68226200-68233000	Strong transcription	Adipose Nuclei	Adipose
49	chr14:68226200-68257600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:68226200-68257600	Strong transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links