Variant report

Variant	rs3742885
Chromosome Location	chr14:68251991-68251992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68250605..68253794-chr14:68255613..68258855,4	MCF-7	breast:
2	chr14:68251188..68252835-chr14:68260230..68262812,2	K562	blood:
3	chr14:68243789..68246176-chr14:68249331..68252041,2	K562	blood:

Variant related genes	Relation type
ENSG00000072121	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10132711	0.84[CHB][hapmap]
rs10132828	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10133485	1.00[CEU][hapmap]
rs10133652	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10135316	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10135925	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10137712	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10142687	0.92[ASN][1000 genomes]
rs10142929	0.92[ASN][1000 genomes]
rs10143219	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10143895	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10144128	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10145884	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10146766	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10146831	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10147569	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10148893	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10151123	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10151317	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10288	1.00[MEX][hapmap]
rs10450891	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10483805	0.84[JPT][hapmap]
rs11158710	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs1118397	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11625742	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs11847628	0.95[CHD][hapmap];0.84[JPT][hapmap]
rs17104663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104681	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17104689	1.00[CEU][hapmap]
rs17104700	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17104774	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104783	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104786	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104793	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104796	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104799	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104823	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104824	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104827	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17104829	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17783202	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs181572	0.84[JPT][hapmap]
rs181575	0.95[CHD][hapmap];0.84[JPT][hapmap]
rs1950766	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs1955469	1.00[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap]
rs1956346	0.84[JPT][hapmap]
rs2180537	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs2235962	0.90[CHD][hapmap]
rs2235963	0.95[CHD][hapmap];0.84[JPT][hapmap]
rs2235965	0.84[JPT][hapmap]
rs2235966	0.86[JPT][hapmap]
rs2295108	0.83[JPT][hapmap]
rs3742882	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs3742883	1.00[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap]
rs3742884	1.00[ASW][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4569184	0.95[CHD][hapmap];0.84[JPT][hapmap]
rs4899226	0.92[ASN][1000 genomes]
rs4899229	1.00[CEU][hapmap]
rs4902523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4902530	1.00[CEU][hapmap]
rs4902531	1.00[CEU][hapmap]
rs58159602	1.00[EUR][1000 genomes]
rs6573802	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7141203	1.00[CEU][hapmap]
rs7143521	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7147296	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7149460	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7149796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7150860	1.00[CEU][hapmap]
rs7151035	0.92[ASN][1000 genomes]
rs7156492	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156725	1.00[MEX][hapmap]
rs7157720	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7160196	0.82[JPT][hapmap]
rs742867	0.85[GIH][hapmap]
rs8006089	0.95[CHD][hapmap];0.84[JPT][hapmap]
rs8006175	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs8007989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8008791	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs8012665	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8015741	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs8017209	1.00[MEX][hapmap]
rs8017930	1.00[CEU][hapmap]
rs8020512	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs932475	1.00[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap]
rs9652362	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs9652363	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs9652364	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs9788517	1.00[CEU][hapmap]
rs9796374	1.00[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68212400-68282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:68213000-68280800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:68213400-68281200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:68213600-68279600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:68213800-68280600	Strong transcription	Liver	Liver
6	chr14:68214000-68258200	Strong transcription	Brain Germinal Matrix	brain
7	chr14:68214600-68281000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:68214800-68266800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:68214800-68276200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr14:68214800-68280200	Strong transcription	Fetal Thymus	thymus
11	chr14:68216600-68267200	Strong transcription	Fetal Stomach	stomach
12	chr14:68220200-68273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:68223800-68257600	Strong transcription	Stomach Smooth Muscle	stomach
14	chr14:68224800-68281000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:68225000-68281000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:68226000-68257600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr14:68226200-68257600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:68226200-68257600	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr14:68226200-68281000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:68226400-68257600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr14:68226400-68257600	Strong transcription	Brain Anterior Caudate	brain
22	chr14:68226400-68257600	Strong transcription	Brain Cingulate Gyrus	brain
23	chr14:68226400-68257600	Strong transcription	Brain Hippocampus Middle	brain
24	chr14:68226400-68257600	Strong transcription	Fetal Lung	lung
25	chr14:68226400-68257600	Strong transcription	Ovary	ovary
26	chr14:68226400-68257800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:68226400-68257800	Strong transcription	Primary T cells from cord blood	blood
28	chr14:68226400-68258000	Strong transcription	Dnd41	blood
29	chr14:68226400-68258400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:68226400-68258600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr14:68226400-68262200	Strong transcription	Fetal Brain Female	brain
32	chr14:68226400-68272800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:68226400-68273200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr14:68226400-68276000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:68226400-68277800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:68226400-68278200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:68226400-68279800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr14:68226400-68280600	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr14:68226400-68280800	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:68226400-68280800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:68226400-68281000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr14:68226600-68257600	Strong transcription	Thymus	Thymus
43	chr14:68226800-68257600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:68226800-68257600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr14:68226800-68257800	Strong transcription	Lung	lung
46	chr14:68226800-68258200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:68226800-68280800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr14:68227800-68253400	Strong transcription	Osteobl	bone
49	chr14:68229200-68272800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:68229200-68281200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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