Variant report

Variant	rs4899229
Chromosome Location	chr14:68365345-68365346
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68361251..68364282-chr14:68364886..68367550,3	MCF-7	breast:

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10130605	1.00[EUR][1000 genomes]
rs10130837	1.00[EUR][1000 genomes]
rs10130997	0.80[AFR][1000 genomes]
rs10131022	0.80[AFR][1000 genomes]
rs10132711	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132828	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs10133485	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10133652	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134664	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs10134763	0.80[AFR][1000 genomes]
rs10134988	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10135046	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs10135256	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs10135316	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10135925	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs10137457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AFR][1000 genomes]
rs10137712	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10138719	0.80[AFR][1000 genomes]
rs10142285	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143219	1.00[CEU][hapmap]
rs10143895	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs10144128	1.00[CEU][hapmap];0.80[YRI][hapmap];0.85[EUR][1000 genomes]
rs10144224	0.81[YRI][hapmap]
rs10145884	1.00[CEU][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10146719	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs10146766	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146831	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147052	0.80[AFR][1000 genomes]
rs10147569	1.00[CEU][hapmap]
rs10148893	1.00[CEU][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10150330	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151123	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs10151317	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10450891	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs10467819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1073024	0.86[EUR][1000 genomes]
rs1073025	1.00[EUR][1000 genomes]
rs1073026	1.00[EUR][1000 genomes]
rs11158710	1.00[CEU][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs1118397	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs11625742	1.00[CEU][hapmap]
rs17104663	0.85[ASN][1000 genomes]
rs17104681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104758	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104774	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104783	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104786	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104793	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs17104796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17104799	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs17104823	1.00[CEU][hapmap]
rs17104824	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104827	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs17104829	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104862	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs17104863	1.00[CEU][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs17104880	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs17104900	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs17783202	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1950766	1.00[CEU][hapmap]
rs1955469	1.00[CEU][hapmap]
rs2180537	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28396172	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28405326	1.00[EUR][1000 genomes]
rs28434770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28444090	1.00[EUR][1000 genomes]
rs28473357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28516665	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28697984	0.92[ASN][1000 genomes]
rs28701947	1.00[EUR][1000 genomes]
rs28751961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28757308	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28816808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28833913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28835585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28847917	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28869007	0.80[AFR][1000 genomes]
rs28896907	1.00[EUR][1000 genomes]
rs34057001	0.80[AFR][1000 genomes]
rs34663731	0.92[ASN][1000 genomes]
rs34700596	1.00[EUR][1000 genomes]
rs34768780	0.92[ASN][1000 genomes]
rs34787467	0.92[ASN][1000 genomes]
rs35010674	0.80[AFR][1000 genomes]
rs35588855	0.92[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs35927243	0.92[ASN][1000 genomes]
rs3742882	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3742883	1.00[CEU][hapmap]
rs3742884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3742885	1.00[CEU][hapmap]
rs4272963	0.85[YRI][hapmap]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902523	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs4902525	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902537	1.00[EUR][1000 genomes]
rs4902541	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902543	0.85[EUR][1000 genomes]
rs58159602	0.85[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes]
rs6573802	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573806	0.80[AFR][1000 genomes]
rs7140987	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7143377	0.92[ASN][1000 genomes]
rs7143483	0.85[YRI][hapmap]
rs7143521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7145385	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs7147296	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149122	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7149351	0.92[ASN][1000 genomes]
rs7149356	0.92[ASN][1000 genomes]
rs7149360	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7149460	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149796	1.00[CEU][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7152727	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7153470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154725	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs7156492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7157550	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs7157699	0.83[YRI][hapmap]
rs7157720	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7159786	0.92[ASN][1000 genomes]
rs742867	1.00[JPT][hapmap]
rs8003181	1.00[EUR][1000 genomes]
rs8006175	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8007989	1.00[CEU][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs8008791	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs8009762	0.85[YRI][hapmap]
rs8010136	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs8012665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8014844	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015427	0.80[AFR][1000 genomes]
rs8015520	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8015595	1.00[CEU][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs8015609	0.80[AFR][1000 genomes]
rs8015741	1.00[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8016563	1.00[EUR][1000 genomes]
rs8017718	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018029	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs8018161	0.80[AFR][1000 genomes]
rs8018528	0.80[AFR][1000 genomes]
rs8018883	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019420	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020512	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs8023116	0.80[AFR][1000 genomes]
rs932475	1.00[CEU][hapmap]
rs957930	1.00[CEU][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs9652362	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs9652363	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes]
rs9652364	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672111	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs9788517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9796374	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:68351400-68367600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:68351400-68367800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:68351600-68367400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:68352000-68367600	Weak transcription	Primary T cells from cord blood	blood
7	chr14:68364200-68374000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:68364400-68368400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:68365000-68365600	Enhancers	Stomach Mucosa	stomach

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