Variant report

Variant	rs4902537
Chromosome Location	chr14:68412268-68412269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68411140..68412950-chr14:68548883..68551088,2	MCF-7	breast:
2	chr14:68405383..68414524-chr14:68603693..68608960,22	MCF-7	breast:
3	chr14:68410124..68413051-chr14:68932315..68935332,3	MCF-7	breast:
4	chr14:68409323..68412497-chr14:68713379..68716018,3	MCF-7	breast:
5	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
6	chr14:68403008..68415592-chr14:69254956..69264690,41	MCF-7	breast:
7	chr14:68409588..68412482-chr14:68706952..68709148,2	MCF-7	breast:
8	chr14:68410294..68412470-chr14:68653966..68656061,2	MCF-7	breast:
9	chr14:68410049..68412875-chr14:68551981..68554163,2	MCF-7	breast:
10	chr14:68406635..68408147-chr14:68411464..68413637,2	MCF-7	breast:
11	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
12	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
13	chr14:68409488..68412789-chr14:68771965..68776404,3	MCF-7	breast:
14	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
15	chr14:68410663..68413615-chr14:68431263..68433122,2	MCF-7	breast:
16	chr14:68403242..68413680-chr14:69255078..69264293,34	MCF-7	breast:
17	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
18	chr14:68409262..68413026-chr14:68656289..68660234,5	MCF-7	breast:
19	chr14:68408216..68412729-chr14:68747829..68750873,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10130605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132711	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10133485	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134988	0.85[EUR][1000 genomes]
rs10135316	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10142285	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143219	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143895	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145884	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146189	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146719	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	1.00[ASN][1000 genomes]
rs10147820	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10148893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151123	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10450891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1118397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104758	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	1.00[ASN][1000 genomes]
rs17104824	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104829	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17783202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	0.98[ASN][1000 genomes]
rs2180537	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396172	0.85[EUR][1000 genomes]
rs28405326	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28434770	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473357	0.85[EUR][1000 genomes]
rs28516665	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28751961	1.00[EUR][1000 genomes]
rs28757308	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	1.00[EUR][1000 genomes]
rs28835585	1.00[EUR][1000 genomes]
rs28847917	1.00[EUR][1000 genomes]
rs28869007	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700596	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	1.00[EUR][1000 genomes]
rs4899229	1.00[EUR][1000 genomes]
rs4902523	0.92[EUR][1000 genomes]
rs4902525	0.93[EUR][1000 genomes]
rs4902529	1.00[EUR][1000 genomes]
rs4902530	1.00[EUR][1000 genomes]
rs4902531	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902532	1.00[EUR][1000 genomes]
rs4902534	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902541	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149122	0.84[EUR][1000 genomes]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149796	0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150860	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[ASN][1000 genomes]
rs73284210	0.98[ASN][1000 genomes]
rs8003181	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007989	0.92[EUR][1000 genomes]
rs8008791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015595	0.92[EUR][1000 genomes]
rs8015741	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	1.00[EUR][1000 genomes]
rs8016563	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017930	1.00[EUR][1000 genomes]
rs8018883	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019420	1.00[EUR][1000 genomes]
rs8020512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9796374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68420200	Weak transcription	Ovary	ovary
2	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
4	chr14:68409400-68415800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:68409400-68416800	Weak transcription	Aorta	Aorta
6	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:68409600-68412800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:68410800-68412600	Enhancers	Fetal Intestine Small	intestine
10	chr14:68410800-68412800	Enhancers	Duodenum Mucosa	Duodenum
11	chr14:68412000-68414400	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:68412000-68421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
14	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
15	chr14:68412200-68412800	Enhancers	A549	lung
16	chr14:68412200-68416200	Weak transcription	Fetal Lung	lung

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