Variant report

Variant	rs28405326
Chromosome Location	chr14:68421378-68421379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10130605	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10130837	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10130997	0.91[ASN][1000 genomes]
rs10131828	0.91[ASN][1000 genomes]
rs10132711	0.91[ASN][1000 genomes]
rs10132828	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10133485	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10133652	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10134988	0.85[EUR][1000 genomes]
rs10135316	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10135925	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10137457	0.91[ASN][1000 genomes]
rs10137712	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10138719	0.89[ASN][1000 genomes]
rs10142285	0.91[ASN][1000 genomes]
rs10142687	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10142929	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10143219	0.91[ASN][1000 genomes]
rs10143895	0.91[ASN][1000 genomes]
rs10144128	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10145884	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10146113	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10146189	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10146719	0.89[ASN][1000 genomes]
rs10146766	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10146831	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10147569	0.91[ASN][1000 genomes]
rs10147820	0.91[ASN][1000 genomes]
rs10148893	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10150330	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10151123	0.91[ASN][1000 genomes]
rs10151317	0.91[ASN][1000 genomes]
rs10450891	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10467819	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1073024	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1073025	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1073026	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158710	0.91[ASN][1000 genomes]
rs1118397	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104758	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104774	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104783	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104786	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104793	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104796	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104799	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104823	0.91[ASN][1000 genomes]
rs17104824	0.91[ASN][1000 genomes]
rs17104827	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17104829	0.91[ASN][1000 genomes]
rs17104862	0.83[ASN][1000 genomes]
rs17104863	0.83[ASN][1000 genomes]
rs17783202	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1950766	0.90[ASN][1000 genomes]
rs2180537	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28396172	0.85[EUR][1000 genomes]
rs28434770	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28444090	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28473357	0.85[EUR][1000 genomes]
rs28516665	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28701947	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28751570	0.91[ASN][1000 genomes]
rs28751961	1.00[EUR][1000 genomes]
rs28757308	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28816808	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28833913	1.00[EUR][1000 genomes]
rs28835585	1.00[EUR][1000 genomes]
rs28847917	1.00[EUR][1000 genomes]
rs28869007	0.91[ASN][1000 genomes]
rs28896907	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34700596	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs4899226	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899228	1.00[EUR][1000 genomes]
rs4899229	1.00[EUR][1000 genomes]
rs4902523	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4902525	0.93[EUR][1000 genomes]
rs4902529	1.00[EUR][1000 genomes]
rs4902530	1.00[EUR][1000 genomes]
rs4902531	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902532	1.00[EUR][1000 genomes]
rs4902534	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902537	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902541	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902543	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573802	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573806	0.83[ASN][1000 genomes]
rs7140987	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7147296	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149122	0.84[EUR][1000 genomes]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149796	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150860	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151035	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7154725	0.91[ASN][1000 genomes]
rs7157550	0.91[ASN][1000 genomes]
rs7157720	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73282485	0.91[ASN][1000 genomes]
rs73284210	0.89[ASN][1000 genomes]
rs8003181	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8006175	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8007989	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8008791	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8014844	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8015520	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015595	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8015741	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8016246	1.00[EUR][1000 genomes]
rs8016563	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8017718	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017930	1.00[EUR][1000 genomes]
rs8018883	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019420	1.00[EUR][1000 genomes]
rs8020512	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs957930	0.91[ASN][1000 genomes]
rs9652362	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9652363	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9652364	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9672111	0.91[ASN][1000 genomes]
rs9796374	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
3	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68412000-68421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
7	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
8	chr14:68417400-68428200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:68419400-68421600	Weak transcription	Aorta	Aorta
10	chr14:68419600-68424800	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68420000-68421800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:68420000-68424800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:68420200-68421800	Weak transcription	Fetal Lung	lung
14	chr14:68420200-68423600	Weak transcription	Fetal Stomach	stomach
15	chr14:68420400-68427400	Weak transcription	Ovary	ovary
16	chr14:68420800-68428200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:68421000-68421800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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