Variant report

Variant	rs8019420
Chromosome Location	chr14:68356265-68356266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68351071..68353646-chr14:68354565..68356448,2	MCF-7	breast:
2	chr14:68350691..68354590-chr14:68355924..68359840,3	MCF-7	breast:
3	chr14:68354841..68356509-chr14:69282085..69284702,3	MCF-7	breast:
4	chr14:68354393..68357388-chr14:69863254..69865122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000182185	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10130605	1.00[EUR][1000 genomes]
rs10130837	1.00[EUR][1000 genomes]
rs10132711	0.83[AMR][1000 genomes]
rs10133485	1.00[EUR][1000 genomes]
rs10133652	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134988	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10135925	1.00[EUR][1000 genomes]
rs10137712	1.00[EUR][1000 genomes]
rs10142285	0.83[AMR][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10144128	0.85[EUR][1000 genomes]
rs10145884	1.00[EUR][1000 genomes]
rs10146766	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146831	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148893	1.00[EUR][1000 genomes]
rs10150330	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10450891	1.00[EUR][1000 genomes]
rs10467819	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1073024	0.86[EUR][1000 genomes]
rs1073025	1.00[EUR][1000 genomes]
rs1073026	1.00[EUR][1000 genomes]
rs1118397	1.00[EUR][1000 genomes]
rs17104663	0.85[ASN][1000 genomes]
rs17104681	0.92[ASN][1000 genomes]
rs17104689	0.92[ASN][1000 genomes]
rs17104700	0.92[ASN][1000 genomes]
rs17104758	1.00[EUR][1000 genomes]
rs17104774	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104783	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104786	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104793	1.00[EUR][1000 genomes]
rs17104796	1.00[EUR][1000 genomes]
rs17104799	1.00[EUR][1000 genomes]
rs17104823	0.85[AMR][1000 genomes]
rs17104824	0.83[AMR][1000 genomes]
rs17104829	0.83[AMR][1000 genomes]
rs17783202	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2180537	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28396172	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28405326	1.00[EUR][1000 genomes]
rs28434770	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28444090	1.00[EUR][1000 genomes]
rs28473357	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28516665	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28697984	0.92[ASN][1000 genomes]
rs28701947	1.00[EUR][1000 genomes]
rs28751961	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28757308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28816808	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28833913	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28835585	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28847917	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[EUR][1000 genomes]
rs34663731	0.92[ASN][1000 genomes]
rs34700596	1.00[EUR][1000 genomes]
rs34768780	0.92[ASN][1000 genomes]
rs34787467	0.92[ASN][1000 genomes]
rs35588855	0.92[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs35927243	0.92[ASN][1000 genomes]
rs3742884	0.85[ASN][1000 genomes]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899229	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902523	0.92[EUR][1000 genomes]
rs4902525	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902529	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902530	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902532	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902534	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902537	1.00[EUR][1000 genomes]
rs4902541	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902543	0.85[EUR][1000 genomes]
rs58159602	0.85[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes]
rs6573802	1.00[EUR][1000 genomes]
rs7140987	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141203	0.92[ASN][1000 genomes]
rs7143377	0.92[ASN][1000 genomes]
rs7143521	0.92[ASN][1000 genomes]
rs7147296	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149122	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7149351	0.92[ASN][1000 genomes]
rs7149356	0.92[ASN][1000 genomes]
rs7149360	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7149460	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149796	0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150860	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7152727	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7153470	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156492	0.85[ASN][1000 genomes]
rs7157720	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7159786	0.92[ASN][1000 genomes]
rs8003181	1.00[EUR][1000 genomes]
rs8006175	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8007989	0.92[EUR][1000 genomes]
rs8008791	1.00[EUR][1000 genomes]
rs8012665	0.85[ASN][1000 genomes]
rs8014844	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015520	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8015595	0.92[EUR][1000 genomes]
rs8015741	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016246	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8016563	1.00[EUR][1000 genomes]
rs8017718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017930	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018883	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020512	1.00[EUR][1000 genomes]
rs9652362	1.00[EUR][1000 genomes]
rs9652363	0.84[EUR][1000 genomes]
rs9652364	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9796374	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518669	chr14:68354542-68362510	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
4	chr14:68343800-68356400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:68348200-68363800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:68350000-68359600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:68351200-68359200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:68351200-68363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:68351400-68356400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr14:68351400-68357600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:68351400-68359200	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:68351400-68361000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:68351400-68367600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:68351400-68367800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:68351600-68357000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:68351600-68367400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr14:68352000-68367600	Weak transcription	Primary T cells from cord blood	blood
18	chr14:68352800-68359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:68353600-68358000	Weak transcription	Fetal Intestine Small	intestine
20	chr14:68354600-68356600	Weak transcription	Fetal Kidney	kidney
21	chr14:68354800-68358000	Weak transcription	Fetal Intestine Large	intestine
22	chr14:68354800-68359400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr14:68355600-68359200	Weak transcription	Ovary	ovary

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