Variant report

Variant	rs34787467
Chromosome Location	chr14:68318195-68318196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68317031..68319960-chr14:68326091..68328593,2	K562	blood:
2	chr14:68315642..68318719-chr14:68330973..68334711,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10134988	0.96[ASN][1000 genomes]
rs17104663	0.92[ASN][1000 genomes]
rs17104681	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104689	1.00[ASN][1000 genomes]
rs17104700	1.00[ASN][1000 genomes]
rs28396172	0.96[ASN][1000 genomes]
rs28473357	0.96[ASN][1000 genomes]
rs28697984	0.85[ASN][1000 genomes]
rs28751961	0.96[ASN][1000 genomes]
rs28833913	0.85[ASN][1000 genomes]
rs28835585	0.92[ASN][1000 genomes]
rs28847917	0.92[ASN][1000 genomes]
rs34663731	1.00[ASN][1000 genomes]
rs34768780	1.00[ASN][1000 genomes]
rs35588855	1.00[ASN][1000 genomes]
rs35927243	1.00[ASN][1000 genomes]
rs3742884	0.92[ASN][1000 genomes]
rs4899228	0.92[ASN][1000 genomes]
rs4899229	0.92[ASN][1000 genomes]
rs4902525	0.96[ASN][1000 genomes]
rs4902529	0.92[ASN][1000 genomes]
rs4902530	0.92[ASN][1000 genomes]
rs4902531	0.92[ASN][1000 genomes]
rs4902532	0.83[ASN][1000 genomes]
rs58159602	0.92[ASN][1000 genomes]
rs7141203	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7143377	1.00[ASN][1000 genomes]
rs7143521	1.00[ASN][1000 genomes]
rs7149122	1.00[ASN][1000 genomes]
rs7149351	1.00[ASN][1000 genomes]
rs7149356	1.00[ASN][1000 genomes]
rs7149360	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7150467	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7150860	0.96[ASN][1000 genomes]
rs7152445	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7152727	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7156492	0.92[ASN][1000 genomes]
rs7159786	1.00[ASN][1000 genomes]
rs8012665	0.92[ASN][1000 genomes]
rs8015520	0.96[ASN][1000 genomes]
rs8016246	0.96[ASN][1000 genomes]
rs8017718	0.92[ASN][1000 genomes]
rs8017930	0.92[ASN][1000 genomes]
rs8018883	0.92[ASN][1000 genomes]
rs8019420	0.92[ASN][1000 genomes]
rs9788517	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr14:68294600-68318200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:68303200-68318200	Weak transcription	Ovary	ovary
5	chr14:68303200-68331800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:68311400-68325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:68313200-68324400	Weak transcription	Gastric	stomach
8	chr14:68313200-68326400	Weak transcription	Pancreas	Pancrea
9	chr14:68313200-68333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:68313200-68333800	Weak transcription	Primary T cells from cord blood	blood
11	chr14:68313400-68322200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:68313800-68320600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:68313800-68324600	Weak transcription	Esophagus	oesophagus
14	chr14:68314000-68331400	Weak transcription	Dnd41	blood
15	chr14:68315800-68318800	Weak transcription	Primary B cells from cord blood	blood
16	chr14:68316600-68319000	Enhancers	Placenta	Placenta
17	chr14:68316600-68321600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:68316800-68319800	Enhancers	Primary hematopoietic stem cells	blood
19	chr14:68316800-68321400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr14:68317000-68320200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr14:68317200-68318400	Weak transcription	Fetal Intestine Small	intestine
22	chr14:68317600-68319200	Enhancers	Fetal Thymus	thymus
23	chr14:68317600-68324800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:68317800-68318600	ZNF genes & repeats	Thymus	Thymus
25	chr14:68317800-68319200	Enhancers	Fetal Muscle Trunk	muscle
26	chr14:68317800-68319200	Enhancers	Spleen	Spleen
27	chr14:68317800-68320800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:68317800-68322800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:68318000-68318200	Enhancers	Fetal Stomach	stomach
30	chr14:68318000-68318200	Enhancers	Lung	lung
31	chr14:68318000-68318600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr14:68318000-68319000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr14:68318000-68321200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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