Variant report

Variant	rs34663731
Chromosome Location	chr14:68285163-68285164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68282145..68286888-chr14:69256784..69261104,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10134988	0.96[ASN][1000 genomes]
rs17104663	0.92[ASN][1000 genomes]
rs17104681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104689	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812250	0.82[EUR][1000 genomes]
rs1955469	0.82[EUR][1000 genomes]
rs28396172	0.96[ASN][1000 genomes]
rs28473357	0.96[ASN][1000 genomes]
rs28697984	0.85[ASN][1000 genomes]
rs28751961	0.96[ASN][1000 genomes]
rs28833913	0.85[ASN][1000 genomes]
rs28835585	0.92[ASN][1000 genomes]
rs28847917	0.92[ASN][1000 genomes]
rs34768780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34787467	1.00[ASN][1000 genomes]
rs34935709	1.00[EUR][1000 genomes]
rs35588855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.82[EUR][1000 genomes]
rs35927243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742882	0.82[EUR][1000 genomes]
rs3742883	0.82[EUR][1000 genomes]
rs3742884	0.92[ASN][1000 genomes]
rs4899228	0.92[ASN][1000 genomes]
rs4899229	0.92[ASN][1000 genomes]
rs4902525	0.96[ASN][1000 genomes]
rs4902529	0.92[ASN][1000 genomes]
rs4902530	0.92[ASN][1000 genomes]
rs4902531	0.92[ASN][1000 genomes]
rs4902532	0.83[ASN][1000 genomes]
rs58159602	0.92[ASN][1000 genomes]
rs7141203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143377	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143521	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149122	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149356	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149360	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150467	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150860	0.96[ASN][1000 genomes]
rs7152445	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152727	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156492	0.92[ASN][1000 genomes]
rs7159786	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012665	0.92[ASN][1000 genomes]
rs8015520	0.96[ASN][1000 genomes]
rs8016246	0.96[ASN][1000 genomes]
rs8017718	0.92[ASN][1000 genomes]
rs8017930	0.92[ASN][1000 genomes]
rs8018883	0.92[ASN][1000 genomes]
rs8019420	0.92[ASN][1000 genomes]
rs932474	0.82[EUR][1000 genomes]
rs932475	0.82[EUR][1000 genomes]
rs9788517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68283600-68286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68283800-68286200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:68283800-68286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:68283800-68286400	Weak transcription	Lung	lung
5	chr14:68283800-68286400	Weak transcription	Small Intestine	intestine
6	chr14:68284000-68285800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:68284000-68285800	Weak transcription	Ovary	ovary
8	chr14:68284000-68285800	Weak transcription	Psoas Muscle	Psoas
9	chr14:68284000-68285800	Weak transcription	Right Atrium	heart
10	chr14:68284000-68285800	Weak transcription	Right Ventricle	heart
11	chr14:68284000-68285800	Weak transcription	HSMMtube	muscle
12	chr14:68284000-68286000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:68284000-68286000	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:68284000-68286000	Weak transcription	HSMM	muscle
15	chr14:68284000-68286000	Weak transcription	NHLF	lung
16	chr14:68284000-68286200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:68284000-68286200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:68284000-68286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:68284000-68286200	Weak transcription	Esophagus	oesophagus
20	chr14:68284000-68286200	Weak transcription	Fetal Lung	lung
21	chr14:68284000-68286200	Weak transcription	Stomach Mucosa	stomach
22	chr14:68284000-68286200	Weak transcription	HMEC	breast
23	chr14:68284000-68286200	Weak transcription	NHDF-Ad	bronchial
24	chr14:68284000-68286400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr14:68284000-68286400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr14:68284000-68286400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr14:68284000-68286400	Weak transcription	Aorta	Aorta
28	chr14:68284000-68286400	Weak transcription	Gastric	stomach
29	chr14:68284200-68285600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:68284200-68285600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:68284200-68285600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:68284200-68285600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:68284200-68285600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:68284200-68285600	Weak transcription	Adipose Nuclei	Adipose
35	chr14:68284200-68285600	Weak transcription	A549	lung
36	chr14:68284200-68285800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:68284200-68285800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:68284200-68285800	Enhancers	Primary B cells from cord blood	blood
39	chr14:68284200-68285800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:68284200-68285800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr14:68284200-68285800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:68284200-68285800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:68284200-68285800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:68284200-68285800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr14:68284200-68285800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr14:68284200-68285800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:68284200-68285800	Weak transcription	Brain Angular Gyrus	brain
48	chr14:68284200-68285800	Weak transcription	Brain Anterior Caudate	brain
49	chr14:68284200-68285800	Weak transcription	Brain Germinal Matrix	brain
50	chr14:68284200-68285800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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