Variant report

Variant	rs4902525
Chromosome Location	chr14:68332523-68332524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68331430..68334740-chr14:69259249..69262451,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10130605	0.93[EUR][1000 genomes]
rs10130837	0.93[EUR][1000 genomes]
rs10131022	0.83[AFR][1000 genomes]
rs10132711	0.83[AMR][1000 genomes]
rs10133485	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10133652	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10134988	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	0.93[EUR][1000 genomes]
rs10137712	0.93[EUR][1000 genomes]
rs10142186	0.80[AFR][1000 genomes]
rs10142285	0.83[AMR][1000 genomes]
rs10142687	0.85[EUR][1000 genomes]
rs10142929	0.85[EUR][1000 genomes]
rs10145884	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10146766	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10146831	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10147052	0.83[AFR][1000 genomes]
rs10148893	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10150330	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10450891	0.93[EUR][1000 genomes]
rs10467819	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1073024	0.80[EUR][1000 genomes]
rs1073025	0.93[EUR][1000 genomes]
rs1073026	0.93[EUR][1000 genomes]
rs1118397	0.93[EUR][1000 genomes]
rs17104663	0.89[ASN][1000 genomes]
rs17104681	0.96[ASN][1000 genomes]
rs17104689	0.96[ASN][1000 genomes]
rs17104700	0.96[ASN][1000 genomes]
rs17104758	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17104774	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104783	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104786	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104793	0.93[EUR][1000 genomes]
rs17104796	0.93[EUR][1000 genomes]
rs17104799	0.93[EUR][1000 genomes]
rs17104824	0.83[AMR][1000 genomes]
rs17104829	0.83[AMR][1000 genomes]
rs17783202	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2180537	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28396172	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28405326	0.93[EUR][1000 genomes]
rs28434770	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28444090	0.93[EUR][1000 genomes]
rs28473357	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28516665	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28697984	0.89[ASN][1000 genomes]
rs28701947	0.93[EUR][1000 genomes]
rs28751961	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28757308	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28816808	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28833913	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28835585	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28847917	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28896907	0.93[EUR][1000 genomes]
rs34057001	0.83[AFR][1000 genomes]
rs34663731	0.96[ASN][1000 genomes]
rs34700596	0.93[EUR][1000 genomes]
rs34768780	0.96[ASN][1000 genomes]
rs34787467	0.96[ASN][1000 genomes]
rs35010674	0.83[AFR][1000 genomes]
rs35588855	0.96[ASN][1000 genomes]
rs35927243	0.96[ASN][1000 genomes]
rs3742884	0.89[ASN][1000 genomes]
rs4272963	0.80[AFR][1000 genomes]
rs4899226	0.85[EUR][1000 genomes]
rs4899228	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899229	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902522	0.80[AFR][1000 genomes]
rs4902523	0.85[EUR][1000 genomes]
rs4902529	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902530	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902531	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902532	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902534	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4902537	0.93[EUR][1000 genomes]
rs4902541	0.83[AMR][1000 genomes]
rs58112975	0.80[AFR][1000 genomes]
rs58159602	0.89[ASN][1000 genomes]
rs60014063	0.93[EUR][1000 genomes]
rs6573802	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7140987	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7141203	0.96[ASN][1000 genomes]
rs7143377	0.96[ASN][1000 genomes]
rs7143483	0.80[AFR][1000 genomes]
rs7143521	0.96[ASN][1000 genomes]
rs7145385	0.83[AFR][1000 genomes]
rs7147296	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7149122	0.96[ASN][1000 genomes]
rs7149351	0.96[ASN][1000 genomes]
rs7149356	0.96[ASN][1000 genomes]
rs7149360	0.96[ASN][1000 genomes]
rs7149460	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7149796	0.85[EUR][1000 genomes]
rs7150467	0.96[ASN][1000 genomes]
rs7150860	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151035	0.85[EUR][1000 genomes]
rs7152445	0.96[ASN][1000 genomes]
rs7152727	0.96[ASN][1000 genomes]
rs7153470	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7156492	0.89[ASN][1000 genomes]
rs7157720	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7159786	0.96[ASN][1000 genomes]
rs8003181	0.93[EUR][1000 genomes]
rs8005494	0.80[AFR][1000 genomes]
rs8006175	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8007989	0.85[EUR][1000 genomes]
rs8008791	0.93[EUR][1000 genomes]
rs8010136	0.83[AFR][1000 genomes]
rs8012665	0.89[ASN][1000 genomes]
rs8014844	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8015427	0.83[AFR][1000 genomes]
rs8015520	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015595	0.85[EUR][1000 genomes]
rs8015609	0.83[AFR][1000 genomes]
rs8015741	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8016246	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016563	0.93[EUR][1000 genomes]
rs8017718	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8017930	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018161	0.83[AFR][1000 genomes]
rs8018528	0.83[AFR][1000 genomes]
rs8018883	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8019420	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8020512	0.93[EUR][1000 genomes]
rs8023116	0.83[AFR][1000 genomes]
rs9652362	0.93[EUR][1000 genomes]
rs9652364	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9796374	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:68313200-68333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68313200-68333800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68318600-68334400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:68319200-68334200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:68320800-68338600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:68321000-68334000	Weak transcription	Primary B cells from cord blood	blood
8	chr14:68321200-68334400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:68321400-68334200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:68322400-68332600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr14:68322600-68334800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr14:68324000-68335600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:68324600-68333800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:68325000-68334400	Weak transcription	Fetal Intestine Small	intestine
16	chr14:68325600-68334800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:68326000-68334000	Weak transcription	Stomach Mucosa	stomach
18	chr14:68326400-68333800	Weak transcription	GM12878-XiMat	blood
19	chr14:68327800-68335800	Weak transcription	NHEK	skin
20	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:68328600-68332600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:68328800-68333800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:68330400-68334000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:68330400-68334200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:68331200-68334400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:68331200-68338400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr14:68331400-68333200	Strong transcription	Dnd41	blood
28	chr14:68331600-68333400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr14:68331600-68335000	Weak transcription	Fetal Muscle Leg	muscle
30	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:68331800-68333800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:68331800-68335200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:68332400-68334200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:68332400-68334600	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links