Variant report

Variant	rs1073024
Chromosome Location	chr14:68416441-68416442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68408062..68409721-chr14:68415116..68416727,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10130605	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132711	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10133485	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135316	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10142285	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143219	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143895	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10145884	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146189	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146719	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	1.00[ASN][1000 genomes]
rs10147820	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10148893	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151123	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10450891	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1118397	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104758	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	1.00[ASN][1000 genomes]
rs17104824	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104829	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17783202	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	0.98[ASN][1000 genomes]
rs2180537	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405326	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28434770	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516665	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28751961	0.86[EUR][1000 genomes]
rs28757308	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	0.86[EUR][1000 genomes]
rs28835585	0.86[EUR][1000 genomes]
rs28847917	0.86[EUR][1000 genomes]
rs28869007	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700596	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899228	0.86[EUR][1000 genomes]
rs4899229	0.86[EUR][1000 genomes]
rs4902525	0.80[EUR][1000 genomes]
rs4902529	0.86[EUR][1000 genomes]
rs4902530	0.86[EUR][1000 genomes]
rs4902531	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4902532	0.86[EUR][1000 genomes]
rs4902534	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902537	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902541	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149460	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150860	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7153470	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	1.00[ASN][1000 genomes]
rs7157550	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[ASN][1000 genomes]
rs73284210	0.98[ASN][1000 genomes]
rs8003181	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008791	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8015741	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	0.86[EUR][1000 genomes]
rs8016563	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8017930	0.86[EUR][1000 genomes]
rs8018883	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8019420	0.86[EUR][1000 genomes]
rs8020512	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9796374	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68420200	Weak transcription	Ovary	ovary
2	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
4	chr14:68409400-68416800	Weak transcription	Aorta	Aorta
5	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:68412000-68421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
9	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
10	chr14:68414600-68416600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:68416200-68417200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68416200-68417200	ZNF genes & repeats	Fetal Lung	lung

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