Variant report

Variant	rs6573806
Chromosome Location	chr14:68481552-68481553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68465557..68467229-chr14:68481031..68483021,2	K562	blood:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10130605	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10130837	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10130997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10131828	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10132711	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10132828	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10133485	0.92[ASN][1000 genomes]
rs10133652	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10134664	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10135046	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10135256	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10135316	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10135925	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10137457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10137712	0.96[ASN][1000 genomes]
rs10138719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10140465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10142285	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143219	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10144128	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10144224	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10145820	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10145884	0.92[ASN][1000 genomes]
rs10146113	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10146189	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10146719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10146766	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10146831	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10147569	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10147820	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10148893	0.92[ASN][1000 genomes]
rs10150330	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10150789	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10151123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10151317	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10450891	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10467819	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1073024	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1073025	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1073026	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11158710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158720	0.81[ASN][1000 genomes]
rs1118397	0.92[ASN][1000 genomes]
rs17104758	0.92[ASN][1000 genomes]
rs17104774	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104783	0.97[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17104786	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104793	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104796	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104799	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104823	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104824	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104827	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104829	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104880	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17104900	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17783202	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1950766	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2057361	0.81[ASN][1000 genomes]
rs2180537	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28405326	0.83[ASN][1000 genomes]
rs28434770	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28444090	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28448732	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28516665	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28701947	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28751570	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28751961	0.80[AFR][1000 genomes]
rs28757308	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28816808	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28833913	0.80[AFR][1000 genomes]
rs28835585	0.80[AFR][1000 genomes]
rs28869007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28896907	0.92[ASN][1000 genomes]
rs34700596	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4899228	0.80[AFR][1000 genomes]
rs4899229	0.80[AFR][1000 genomes]
rs4902529	0.80[AFR][1000 genomes]
rs4902530	0.80[AFR][1000 genomes]
rs4902532	0.80[AFR][1000 genomes]
rs4902534	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4902537	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4902541	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902543	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60014063	0.92[ASN][1000 genomes]
rs6573802	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7147296	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7149460	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7153470	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7154725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7157550	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7157720	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73282485	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73284210	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8003181	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8006175	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8008791	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8014844	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8015741	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8016246	0.80[AFR][1000 genomes]
rs8016563	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8017930	0.80[AFR][1000 genomes]
rs8018029	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8020512	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs957930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9652362	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9652363	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9652364	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9672111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9796374	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68476600-68484200	Enhancers	Rectal Smooth Muscle	rectum
2	chr14:68478600-68483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68478800-68481600	Weak transcription	Fetal Intestine Small	intestine
4	chr14:68478800-68482400	Weak transcription	Osteobl	bone
5	chr14:68478800-68482600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:68478800-68482800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:68478800-68482800	Weak transcription	Stomach Mucosa	stomach
8	chr14:68478800-68482800	Weak transcription	NHDF-Ad	bronchial
9	chr14:68478800-68483000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:68478800-68483000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:68479000-68482600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:68479000-68482600	Weak transcription	Hela-S3	cervix
13	chr14:68479000-68483000	Weak transcription	NH-A	brain
14	chr14:68479200-68484800	Weak transcription	Liver	Liver
15	chr14:68479600-68482400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr14:68480000-68481600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:68480000-68482800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:68480000-68485800	Weak transcription	Small Intestine	intestine
19	chr14:68480000-68495000	Weak transcription	Ovary	ovary
20	chr14:68480200-68481600	Weak transcription	Fetal Lung	lung
21	chr14:68480200-68483000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:68480200-68483000	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:68481000-68481800	Enhancers	Fetal Stomach	stomach

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