Variant report

Variant	rs10142285
Chromosome Location	chr14:68433238-68433239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68428107..68429645-chr14:68432479..68434290,2	MCF-7	breast:
2	chr14:68421406..68425336-chr14:68430124..68433413,6	MCF-7	breast:
3	chr14:68431169..68433591-chr14:68443771..68448104,4	MCF-7	breast:
4	chr14:68430411..68433270-chr14:68602747..68607900,7	MCF-7	breast:
5	chr14:68431871..68434787-chr14:68656702..68659683,2	MCF-7	breast:
6	chr14:68407550..68410213-chr14:68431629..68433238,2	MCF-7	breast:
7	chr14:68428134..68434454-chr14:69257495..69262698,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10130605	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133485	1.00[ASN][1000 genomes]
rs10133652	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10134664	0.90[AFR][1000 genomes]
rs10135046	0.90[AFR][1000 genomes]
rs10135256	0.86[AFR][1000 genomes]
rs10135316	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	0.96[ASN][1000 genomes]
rs10138719	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10140465	0.90[AFR][1000 genomes]
rs10143219	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143895	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144224	0.86[AFR][1000 genomes]
rs10145820	0.83[AFR][1000 genomes]
rs10145884	1.00[ASN][1000 genomes]
rs10146113	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146189	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146719	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147820	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148893	1.00[ASN][1000 genomes]
rs10150330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10150789	0.91[AFR][1000 genomes]
rs10151123	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10450891	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1118397	1.00[ASN][1000 genomes]
rs17104758	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104880	0.94[AFR][1000 genomes]
rs17104900	0.90[AFR][1000 genomes]
rs17783202	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2180537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28405326	0.91[ASN][1000 genomes]
rs28434770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28448732	0.88[AFR][1000 genomes]
rs28473357	1.00[AMR][1000 genomes]
rs28516665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751961	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28757308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28835585	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28847917	1.00[AMR][1000 genomes]
rs28869007	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[ASN][1000 genomes]
rs34700596	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4899228	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899229	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902525	0.83[AMR][1000 genomes]
rs4902529	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902530	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902532	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4902537	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4902541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	1.00[ASN][1000 genomes]
rs6573802	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7149460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7153470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73284210	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003181	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8008791	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8015741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016563	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8017930	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018029	0.89[AFR][1000 genomes]
rs8019420	0.83[AMR][1000 genomes]
rs8020512	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9796374	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
2	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:68427400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:68428600-68433400	Enhancers	Colon Smooth Muscle	Colon
5	chr14:68428600-68435000	Enhancers	Fetal Intestine Large	intestine
6	chr14:68429200-68433800	Weak transcription	Primary T cells from cord blood	blood
7	chr14:68429400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:68429400-68445200	Weak transcription	Ovary	ovary
9	chr14:68429600-68444400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:68430000-68433800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr14:68430200-68433600	Enhancers	Fetal Intestine Small	intestine
12	chr14:68430400-68434400	Enhancers	Stomach Mucosa	stomach
13	chr14:68430600-68434600	Enhancers	Duodenum Mucosa	Duodenum
14	chr14:68430800-68433400	Enhancers	Fetal Stomach	stomach
15	chr14:68431200-68433600	Enhancers	Fetal Lung	lung
16	chr14:68431200-68434600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr14:68431400-68433400	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr14:68432000-68438200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:68432200-68433800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:68432400-68433400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:68432400-68437800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:68432400-68437800	Weak transcription	HMEC	breast
23	chr14:68432400-68439000	Weak transcription	Small Intestine	intestine
24	chr14:68432600-68433800	Weak transcription	Primary B cells from cord blood	blood
25	chr14:68432600-68438400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:68432600-68438800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:68432800-68434200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:68432800-68437000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr14:68433000-68433800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr14:68433000-68436800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:68433200-68433400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:68433200-68433800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:68433200-68435600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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