Variant report

Variant	rs7145385
Chromosome Location	chr14:68303082-68303083
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68302059..68305269-chr14:68407604..68409424,3	MCF-7	breast:
2	chr14:68302688..68305578-chr14:69257558..69260050,2	MCF-7	breast:
3	chr14:68301208..68304159-chr14:69257009..69259778,2	MCF-7	breast:
4	chr14:68297953..68300289-chr14:68301292..68303564,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10131022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133652	0.84[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.83[YRI][hapmap]
rs10133699	1.00[EUR][1000 genomes]
rs10134763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134988	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135925	1.00[MEX][hapmap]
rs10135963	1.00[EUR][1000 genomes]
rs10136738	1.00[EUR][1000 genomes]
rs10139064	1.00[EUR][1000 genomes]
rs10139482	1.00[EUR][1000 genomes]
rs10142186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143895	0.83[YRI][hapmap]
rs10144128	1.00[MEX][hapmap]
rs10145923	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10145933	1.00[EUR][1000 genomes]
rs10146242	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10146719	0.83[YRI][hapmap]
rs10147052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147145	1.00[EUR][1000 genomes]
rs10150532	1.00[EUR][1000 genomes]
rs10151123	0.83[YRI][hapmap]
rs11158710	1.00[MEX][hapmap]
rs17104527	1.00[EUR][1000 genomes]
rs17104547	1.00[EUR][1000 genomes]
rs17104587	1.00[EUR][1000 genomes]
rs17104591	1.00[EUR][1000 genomes]
rs17104697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104783	0.81[YRI][hapmap]
rs17104786	1.00[MEX][hapmap]
rs17104796	1.00[MEX][hapmap]
rs17104823	1.00[MEX][hapmap]
rs17104862	0.83[YRI][hapmap]
rs17104863	1.00[MEX][hapmap]
rs17783202	0.84[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.83[YRI][hapmap]
rs2180537	1.00[MEX][hapmap]
rs2234512	1.00[EUR][1000 genomes]
rs2295109	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2295110	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28396172	0.99[AFR][1000 genomes]
rs28451245	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28556682	1.00[EUR][1000 genomes]
rs28751961	0.80[AFR][1000 genomes]
rs28780734	1.00[EUR][1000 genomes]
rs28784083	1.00[EUR][1000 genomes]
rs28817410	1.00[EUR][1000 genomes]
rs28833913	0.80[AFR][1000 genomes]
rs28835585	0.80[AFR][1000 genomes]
rs28844401	1.00[EUR][1000 genomes]
rs34057001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35010674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4272963	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899218	1.00[EUR][1000 genomes]
rs4899228	0.80[AFR][1000 genomes]
rs4899229	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs4902510	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4902516	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4902522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902523	0.89[LWK][hapmap];1.00[MEX][hapmap]
rs4902525	0.83[AFR][1000 genomes]
rs4902529	0.80[AFR][1000 genomes]
rs4902530	0.80[AFR][1000 genomes]
rs4902532	0.80[AFR][1000 genomes]
rs57023353	1.00[EUR][1000 genomes]
rs57348219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58112975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58952057	1.00[EUR][1000 genomes]
rs59945885	1.00[EUR][1000 genomes]
rs6573802	0.83[YRI][hapmap]
rs7143223	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7143483	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144698	1.00[EUR][1000 genomes]
rs7147296	1.00[MEX][hapmap]
rs7149460	0.81[YRI][hapmap]
rs7149669	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7150860	0.89[LWK][hapmap];1.00[MEX][hapmap]
rs7154725	0.83[YRI][hapmap]
rs7156195	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7157550	0.83[YRI][hapmap]
rs7157699	1.00[ASW][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7359109	1.00[EUR][1000 genomes]
rs7765	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8005494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006175	0.82[YRI][hapmap]
rs8007916	1.00[EUR][1000 genomes]
rs8008791	1.00[MEX][hapmap]
rs8009762	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8010136	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015427	0.82[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016246	0.80[AFR][1000 genomes]
rs8017930	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs8018161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018528	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672111	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287200-68303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:68287400-68304800	Weak transcription	Lung	lung
3	chr14:68287400-68312800	Weak transcription	Aorta	Aorta
4	chr14:68287400-68312800	Weak transcription	Esophagus	oesophagus
5	chr14:68287400-68315200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:68287600-68303600	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:68287600-68303800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:68287600-68304800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:68287600-68306000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
11	chr14:68287800-68304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:68287800-68305000	Weak transcription	Fetal Kidney	kidney
13	chr14:68287800-68306400	Weak transcription	Fetal Lung	lung
14	chr14:68287800-68310600	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:68288000-68306400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:68288000-68306400	Weak transcription	HepG2	liver
18	chr14:68288000-68306800	Weak transcription	A549	lung
19	chr14:68288200-68304000	Weak transcription	K562	blood
20	chr14:68288200-68306200	Weak transcription	NHDF-Ad	bronchial
21	chr14:68288400-68303800	Weak transcription	Liver	Liver
22	chr14:68289600-68304800	Weak transcription	Fetal Intestine Large	intestine
23	chr14:68291400-68312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:68291600-68303200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:68294200-68304600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:68294200-68315000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr14:68294200-68316600	Weak transcription	Placenta	Placenta
28	chr14:68294400-68303200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr14:68294400-68304400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr14:68294400-68304600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:68294400-68306400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr14:68294400-68312400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:68294600-68304200	Weak transcription	Fetal Muscle Leg	muscle
34	chr14:68294600-68305400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:68294600-68312000	Weak transcription	Fetal Stomach	stomach
36	chr14:68294600-68312400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:68294600-68318200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:68294800-68306600	Weak transcription	Fetal Thymus	thymus
39	chr14:68294800-68312800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:68295600-68306000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:68295600-68306200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:68295800-68304600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:68298200-68312800	Weak transcription	Primary T cells from cord blood	blood
44	chr14:68299400-68303200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr14:68300600-68312800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:68300800-68303200	Strong transcription	Ovary	ovary
48	chr14:68300800-68306400	Weak transcription	NHEK	skin
49	chr14:68301800-68303200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:68301800-68303400	Strong transcription	Fetal Intestine Small	intestine

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