Variant report

Variant	rs28697984
Chromosome Location	chr14:68345651-68345652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10134988	0.89[ASN][1000 genomes]
rs17104681	0.85[ASN][1000 genomes]
rs17104689	0.85[ASN][1000 genomes]
rs17104700	0.85[ASN][1000 genomes]
rs28396172	0.89[ASN][1000 genomes]
rs28473357	0.89[ASN][1000 genomes]
rs28751961	0.89[ASN][1000 genomes]
rs28833913	0.84[ASN][1000 genomes]
rs28835585	0.92[ASN][1000 genomes]
rs28847917	0.92[ASN][1000 genomes]
rs34663731	0.85[ASN][1000 genomes]
rs34768780	0.85[ASN][1000 genomes]
rs34787467	0.85[ASN][1000 genomes]
rs35588855	0.85[ASN][1000 genomes]
rs35927243	0.85[ASN][1000 genomes]
rs4899228	0.92[ASN][1000 genomes]
rs4899229	0.92[ASN][1000 genomes]
rs4902525	0.89[ASN][1000 genomes]
rs4902529	0.92[ASN][1000 genomes]
rs4902530	0.92[ASN][1000 genomes]
rs4902531	0.92[ASN][1000 genomes]
rs4902532	0.83[ASN][1000 genomes]
rs7141203	0.85[ASN][1000 genomes]
rs7143377	0.85[ASN][1000 genomes]
rs7143521	0.85[ASN][1000 genomes]
rs7149122	0.85[ASN][1000 genomes]
rs7149351	0.85[ASN][1000 genomes]
rs7149356	0.85[ASN][1000 genomes]
rs7149360	0.85[ASN][1000 genomes]
rs7150467	0.85[ASN][1000 genomes]
rs7150860	0.89[ASN][1000 genomes]
rs7152445	0.85[ASN][1000 genomes]
rs7152727	0.85[ASN][1000 genomes]
rs7159786	0.85[ASN][1000 genomes]
rs8015520	0.89[ASN][1000 genomes]
rs8016246	0.89[ASN][1000 genomes]
rs8017718	0.92[ASN][1000 genomes]
rs8017930	0.92[ASN][1000 genomes]
rs8018883	0.92[ASN][1000 genomes]
rs8019420	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:68334200-68348200	Weak transcription	Lung	lung
5	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
6	chr14:68335200-68348000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:68342400-68351800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:68342600-68347400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:68342600-68347600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:68342800-68348000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:68343800-68356400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:68344200-68351000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:68345400-68353000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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