Variant report

Variant	rs11851991
Chromosome Location	chr14:68566635-68566636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10129355	0.81[JPT][hapmap]
rs10129612	0.89[JPT][hapmap]
rs10132022	0.81[JPT][hapmap]
rs10132711	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10132828	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10133652	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10133770	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10134124	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10134320	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10134664	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135046	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135256	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135316	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10135925	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10137330	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10137457	1.00[JPT][hapmap]
rs10137712	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10139236	0.81[JPT][hapmap]
rs10139386	0.81[JPT][hapmap]
rs10140465	0.94[ASN][1000 genomes]
rs10141018	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10143219	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10143455	0.81[JPT][hapmap]
rs10143895	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10144128	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10144224	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10145197	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10145820	0.89[ASN][1000 genomes]
rs10145884	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10146719	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10146766	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10146831	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10147311	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10147569	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10148713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148893	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10149801	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10150584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10150789	0.94[ASN][1000 genomes]
rs10151123	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10151317	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10450891	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1080958	0.81[JPT][hapmap]
rs10873211	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10873212	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158710	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs11158719	0.81[JPT][hapmap]
rs11158720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158721	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1118397	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs11622787	0.81[JPT][hapmap]
rs11623355	0.81[JPT][hapmap]
rs11623467	0.81[JPT][hapmap]
rs11844842	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11847339	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11849196	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11851597	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437178	0.81[JPT][hapmap]
rs1548264	0.81[JPT][hapmap]
rs1548265	0.81[JPT][hapmap]
rs17104774	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17104783	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17104786	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17104793	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs17104796	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17104799	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs17104823	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17104824	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17104827	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17104829	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17104862	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17104863	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17104880	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104889	0.81[JPT][hapmap]
rs17104900	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17104908	0.81[JPT][hapmap]
rs17104917	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104947	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104953	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104992	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17105001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17783202	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1950766	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1951411	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1980654	0.81[JPT][hapmap]
rs1980655	0.81[JPT][hapmap]
rs2057361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2180537	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2208596	0.81[JPT][hapmap]
rs2767364	1.00[EUR][1000 genomes]
rs28372014	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28448732	0.89[ASN][1000 genomes]
rs28716846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902548	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902550	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60562079	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60841871	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573802	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs6573805	0.81[JPT][hapmap]
rs6573815	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6573816	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7145089	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147296	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7147522	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147935	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7148799	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7149343	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7149460	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7150168	0.81[JPT][hapmap]
rs7150716	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153978	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154228	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154645	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154725	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7155152	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7157152	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7157550	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7157720	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7160068	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7161070	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73286292	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359083	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs8007347	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8008791	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs8011367	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8012493	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8013061	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8014000	0.81[JPT][hapmap]
rs8015741	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs8018029	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8020512	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs8020795	0.81[JPT][hapmap]
rs957930	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9652362	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9652363	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9652364	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9672111	1.00[JPT][hapmap]
rs9796374	0.82[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68556400-68568400	Weak transcription	Primary T cells from cord blood	blood
3	chr14:68556600-68568000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:68561600-68568200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:68562200-68568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68564000-68567400	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:68565400-68567000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:68565600-68567000	Enhancers	Fetal Kidney	kidney
9	chr14:68565600-68567000	Enhancers	Fetal Lung	lung
10	chr14:68565600-68567200	Enhancers	Fetal Muscle Leg	muscle
11	chr14:68565600-68568600	Enhancers	Colon Smooth Muscle	Colon
12	chr14:68566000-68568000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr14:68566400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:68566600-68566800	Enhancers	Stomach Smooth Muscle	stomach
15	chr14:68566600-68570800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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