Variant report

Variant	rs10149801
Chromosome Location	chr14:68602716-68602717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68541688..68545482-chr14:68601842..68606347,5	MCF-7	breast:
2	chr14:68602556..68605498-chr14:68644856..68647677,2	MCF-7	breast:
3	chr14:68601379..68608308-chr14:69256404..69263440,24	MCF-7	breast:
4	chr14:68602359..68604172-chr14:68607453..68609034,2	K562	blood:
5	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:
6	chr14:68600338..68604507-chr14:69260783..69264203,4	MCF-7	breast:
7	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
8	chr14:68602495..68610533-chr14:68655867..68660749,19	MCF-7	breast:
9	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
10	chr14:68602094..68605658-chr14:68697621..68700210,3	MCF-7	breast:
11	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
12	chr14:68601301..68602871-chr14:68607372..68610107,2	MCF-7	breast:
13	chr14:68532345..68534667-chr14:68601779..68604351,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10133770	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134124	0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134320	0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134664	0.82[ASN][1000 genomes]
rs10135046	0.82[ASN][1000 genomes]
rs10135256	0.82[ASN][1000 genomes]
rs10137330	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10140465	0.80[ASN][1000 genomes]
rs10141018	0.87[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10144224	0.82[ASN][1000 genomes]
rs10145197	0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10147311	0.82[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10148713	1.00[EUR][1000 genomes]
rs10150584	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150789	0.80[ASN][1000 genomes]
rs10873211	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10873212	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158720	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158721	0.88[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11844842	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11847339	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849196	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851597	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11851991	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104880	0.82[ASN][1000 genomes]
rs17104900	0.80[ASN][1000 genomes]
rs17104917	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104947	0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104953	0.81[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104992	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17105001	0.90[ASN][1000 genomes]
rs1951411	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057361	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2767364	1.00[EUR][1000 genomes]
rs28372014	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28448732	0.80[ASN][1000 genomes]
rs28716846	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902548	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902550	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60562079	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60841871	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573815	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6573816	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145089	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7147522	0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147935	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148799	0.88[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149343	0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150716	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153978	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154228	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154645	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7155152	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7157152	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7161070	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73286292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359083	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8007347	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008413	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8011367	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8012493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013061	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018029	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3523718	chr14:68601299-68605697	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3421508	chr14:68601799-68604997	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3523696	chr14:68602224-68605072	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2489967	chr14:68602325-68604366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3323995	chr14:68602399-68604747	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3523663	chr14:68602570-68604062	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68592200-68603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68592400-68604600	Weak transcription	Psoas Muscle	Psoas
3	chr14:68592400-68606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:68593400-68603400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:68594200-68604400	Weak transcription	Fetal Stomach	stomach
6	chr14:68596200-68604800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:68598800-68603800	Weak transcription	Adipose Nuclei	Adipose
8	chr14:68599600-68603600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:68599600-68603800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:68599800-68603000	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:68599800-68604400	Weak transcription	Ovary	ovary
12	chr14:68600000-68604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:68600000-68606200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:68601200-68606400	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:68601400-68604400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:68601800-68603200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:68601800-68604200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr14:68601800-68607200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:68601800-68608800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:68601800-68613600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:68601800-68614400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:68601800-68614800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:68601800-68615600	Enhancers	HMEC	breast
24	chr14:68602000-68602800	Enhancers	NHDF-Ad	bronchial
25	chr14:68602000-68603200	Enhancers	HSMMtube	muscle
26	chr14:68602000-68607400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:68602200-68602800	Enhancers	NH-A	brain
28	chr14:68602200-68603200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:68602200-68606600	Enhancers	NHEK	skin
30	chr14:68602400-68603800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:68602400-68603800	Weak transcription	GM12878-XiMat	blood
32	chr14:68602400-68604000	Weak transcription	Fetal Kidney	kidney
33	chr14:68602400-68604200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:68602400-68604200	Weak transcription	Stomach Mucosa	stomach
35	chr14:68602400-68609600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:68602400-68610200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:68602600-68602800	Enhancers	HSMM	muscle
38	chr14:68602600-68603000	Weak transcription	A549	lung
39	chr14:68602600-68603600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:68602600-68603800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:68602600-68603800	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:68602600-68603800	Weak transcription	Fetal Intestine Small	intestine
43	chr14:68602600-68603800	Weak transcription	Hela-S3	cervix
44	chr14:68602600-68603800	Weak transcription	Osteobl	bone
45	chr14:68602600-68604200	Weak transcription	NHLF	lung

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