Variant report

Variant	rs34588410
Chromosome Location	chr14:68482890-68482891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68465557..68467229-chr14:68481031..68483021,2	K562	blood:
2	chr14:68470581..68473660-chr14:68481914..68484742,3	MCF-7	breast:
3	chr14:68481706..68483588-chr14:68484009..68486656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10129355	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10129612	0.83[EUR][1000 genomes]
rs10130829	0.88[EUR][1000 genomes]
rs10132022	0.84[EUR][1000 genomes]
rs10133262	0.88[EUR][1000 genomes]
rs10133883	0.86[EUR][1000 genomes]
rs10136129	0.88[EUR][1000 genomes]
rs10136174	0.83[EUR][1000 genomes]
rs10136790	0.88[EUR][1000 genomes]
rs10136868	0.84[EUR][1000 genomes]
rs10139548	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10140097	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10140282	0.88[EUR][1000 genomes]
rs10143455	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10143843	0.88[EUR][1000 genomes]
rs10144995	0.83[EUR][1000 genomes]
rs10151387	0.81[EUR][1000 genomes]
rs1033686	0.81[EUR][1000 genomes]
rs10467735	0.88[EUR][1000 genomes]
rs11158700	0.87[ASN][1000 genomes]
rs11158701	0.87[ASN][1000 genomes]
rs11158715	0.83[EUR][1000 genomes]
rs11158716	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158717	0.81[EUR][1000 genomes]
rs11158718	0.87[ASN][1000 genomes]
rs11621638	0.90[EUR][1000 genomes]
rs11622135	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622243	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11622787	0.89[EUR][1000 genomes]
rs11623355	0.86[EUR][1000 genomes]
rs11623984	0.86[EUR][1000 genomes]
rs11624484	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11624609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11626280	0.87[EUR][1000 genomes]
rs11626332	0.87[ASN][1000 genomes]
rs11629073	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11844529	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11846344	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11848187	0.85[EUR][1000 genomes]
rs11848769	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850191	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11850946	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852180	0.88[EUR][1000 genomes]
rs11852208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100584	0.88[EUR][1000 genomes]
rs12431490	0.87[ASN][1000 genomes]
rs12431697	0.82[EUR][1000 genomes]
rs12432558	0.87[ASN][1000 genomes]
rs12432681	0.86[EUR][1000 genomes]
rs12433779	0.86[ASN][1000 genomes]
rs12434751	0.87[ASN][1000 genomes]
rs12435554	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436203	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437178	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12437276	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13329056	0.89[EUR][1000 genomes]
rs17104764	0.88[EUR][1000 genomes]
rs17104776	0.80[EUR][1000 genomes]
rs17104800	0.83[EUR][1000 genomes]
rs17192558	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192586	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783304	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.86[EUR][1000 genomes]
rs1980655	0.86[EUR][1000 genomes]
rs2009191	0.83[EUR][1000 genomes]
rs2038565	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2093358	0.84[EUR][1000 genomes]
rs2208596	0.89[EUR][1000 genomes]
rs28444723	0.83[EUR][1000 genomes]
rs28470365	0.85[EUR][1000 genomes]
rs28474827	0.82[EUR][1000 genomes]
rs28474995	0.86[EUR][1000 genomes]
rs28488544	0.88[EUR][1000 genomes]
rs28509330	0.88[EUR][1000 genomes]
rs28649231	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28713367	0.87[ASN][1000 genomes]
rs2877369	0.88[EUR][1000 genomes]
rs34723132	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4436722	0.88[EUR][1000 genomes]
rs4902535	0.88[EUR][1000 genomes]
rs4902536	0.88[EUR][1000 genomes]
rs4902538	0.87[EUR][1000 genomes]
rs4902539	0.88[EUR][1000 genomes]
rs4902540	0.88[EUR][1000 genomes]
rs4902544	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57990032	0.89[EUR][1000 genomes]
rs58151429	0.83[EUR][1000 genomes]
rs60201005	0.89[EUR][1000 genomes]
rs60471554	0.86[EUR][1000 genomes]
rs6573800	0.88[EUR][1000 genomes]
rs6573801	0.88[EUR][1000 genomes]
rs6573805	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573814	0.86[EUR][1000 genomes]
rs7142112	0.88[EUR][1000 genomes]
rs7142210	0.88[EUR][1000 genomes]
rs7142860	0.88[EUR][1000 genomes]
rs7145044	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145771	0.85[EUR][1000 genomes]
rs7146354	0.88[EUR][1000 genomes]
rs7150705	0.87[ASN][1000 genomes]
rs7150903	0.87[ASN][1000 genomes]
rs7151495	0.87[ASN][1000 genomes]
rs7151917	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154014	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154646	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7155097	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7155840	0.83[EUR][1000 genomes]
rs7155985	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157185	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7158544	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7160115	0.88[EUR][1000 genomes]
rs7161069	0.86[EUR][1000 genomes]
rs72725127	0.87[ASN][1000 genomes]
rs72725138	0.87[EUR][1000 genomes]
rs72725141	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725149	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725151	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725153	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725154	0.90[EUR][1000 genomes]
rs72725156	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725157	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725158	0.90[EUR][1000 genomes]
rs72725159	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725160	0.90[EUR][1000 genomes]
rs72725163	0.90[EUR][1000 genomes]
rs72725165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725168	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725170	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725172	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725173	0.85[EUR][1000 genomes]
rs72725174	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72725183	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725185	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725186	0.87[ASN][1000 genomes]
rs72725187	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725188	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs764088	0.87[ASN][1000 genomes]
rs8006437	0.88[EUR][1000 genomes]
rs8006492	0.86[EUR][1000 genomes]
rs8013677	0.88[EUR][1000 genomes]
rs8015128	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8016525	0.88[EUR][1000 genomes]
rs8020795	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8021404	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022206	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9323501	0.83[EUR][1000 genomes]
rs9672142	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68476600-68484200	Enhancers	Rectal Smooth Muscle	rectum
2	chr14:68478600-68483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68478800-68483000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:68478800-68483000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:68479000-68483000	Weak transcription	NH-A	brain
6	chr14:68479200-68484800	Weak transcription	Liver	Liver
7	chr14:68480000-68485800	Weak transcription	Small Intestine	intestine
8	chr14:68480000-68495000	Weak transcription	Ovary	ovary
9	chr14:68480200-68483000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:68480200-68483000	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68481600-68484200	Enhancers	Fetal Lung	lung
12	chr14:68481800-68483000	Weak transcription	Fetal Stomach	stomach
13	chr14:68482400-68483600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr14:68482400-68483800	Enhancers	Osteobl	bone
15	chr14:68482600-68483000	Weak transcription	Fetal Intestine Small	intestine
16	chr14:68482600-68483200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr14:68482600-68483600	Enhancers	Hela-S3	cervix
18	chr14:68482600-68483800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:68482800-68483000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr14:68482800-68483000	Enhancers	A549	lung
21	chr14:68482800-68483200	Enhancers	Stomach Mucosa	stomach
22	chr14:68482800-68483600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:68482800-68483600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:68482800-68483600	Enhancers	NHDF-Ad	bronchial
25	chr14:68482800-68484200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:68482800-68486200	Enhancers	Fetal Intestine Large	intestine

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