Variant report

Variant	rs60471554
Chromosome Location	chr14:68507052-68507053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68500366..68502626-chr14:68506216..68509390,3	MCF-7	breast:

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10129355	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10129612	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10130829	0.93[EUR][1000 genomes]
rs10132022	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10133262	0.92[EUR][1000 genomes]
rs10133883	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136129	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10136174	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10136790	0.92[EUR][1000 genomes]
rs10136868	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137233	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10139236	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10139386	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10139548	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10140097	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10140282	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10140420	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10140493	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10143455	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10143843	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10144995	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10151115	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10151387	0.88[EUR][1000 genomes]
rs10467735	0.92[EUR][1000 genomes]
rs1080956	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1080957	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1080958	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158715	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158716	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11158717	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158719	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11622135	0.86[EUR][1000 genomes]
rs11622243	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11622787	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11623355	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623467	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11623984	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624209	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11624609	0.85[EUR][1000 genomes]
rs11626280	0.91[EUR][1000 genomes]
rs11628745	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11629073	0.80[EUR][1000 genomes]
rs11844529	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11846344	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11848187	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11848769	0.86[EUR][1000 genomes]
rs11850191	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11850946	0.84[EUR][1000 genomes]
rs11852180	0.93[EUR][1000 genomes]
rs11852208	0.85[EUR][1000 genomes]
rs12100584	0.90[EUR][1000 genomes]
rs12431697	0.86[EUR][1000 genomes]
rs12432681	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435554	0.84[EUR][1000 genomes]
rs12437043	0.80[ASN][1000 genomes]
rs12437178	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12437276	0.86[EUR][1000 genomes]
rs13329056	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1548264	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548265	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17104764	0.92[EUR][1000 genomes]
rs17104776	0.83[EUR][1000 genomes]
rs17104800	0.87[EUR][1000 genomes]
rs17104889	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17192558	0.84[EUR][1000 genomes]
rs17192586	0.83[EUR][1000 genomes]
rs17783304	0.84[EUR][1000 genomes]
rs1810639	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980654	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980655	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009191	0.87[EUR][1000 genomes]
rs2038565	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2093358	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2208596	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28444723	0.88[EUR][1000 genomes]
rs28470365	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28474827	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28474995	0.89[EUR][1000 genomes]
rs28488544	0.92[EUR][1000 genomes]
rs28509330	0.93[EUR][1000 genomes]
rs2877369	0.92[EUR][1000 genomes]
rs33949561	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34588410	0.86[EUR][1000 genomes]
rs34723132	0.84[EUR][1000 genomes]
rs4436722	0.92[EUR][1000 genomes]
rs4899231	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899232	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902535	0.92[EUR][1000 genomes]
rs4902536	0.92[EUR][1000 genomes]
rs4902538	0.91[EUR][1000 genomes]
rs4902539	0.92[EUR][1000 genomes]
rs4902540	0.93[EUR][1000 genomes]
rs4902544	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902545	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902547	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57069083	0.81[EUR][1000 genomes]
rs57990032	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58151429	0.87[EUR][1000 genomes]
rs60201005	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60415085	0.82[EUR][1000 genomes]
rs6573800	0.92[EUR][1000 genomes]
rs6573801	0.92[EUR][1000 genomes]
rs6573805	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573814	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67566613	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68139749	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7142112	0.92[EUR][1000 genomes]
rs7142210	0.92[EUR][1000 genomes]
rs7142860	0.92[EUR][1000 genomes]
rs7145044	0.84[EUR][1000 genomes]
rs7145771	0.89[EUR][1000 genomes]
rs7146354	0.92[EUR][1000 genomes]
rs7150168	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7151917	0.84[EUR][1000 genomes]
rs7154014	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7154646	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7155097	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7155840	0.87[EUR][1000 genomes]
rs7155985	0.84[EUR][1000 genomes]
rs7156822	0.80[ASN][1000 genomes]
rs7157185	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7158544	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7160115	0.93[EUR][1000 genomes]
rs7161069	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725141	0.84[EUR][1000 genomes]
rs72725149	0.84[EUR][1000 genomes]
rs72725151	0.86[EUR][1000 genomes]
rs72725153	0.86[EUR][1000 genomes]
rs72725156	0.82[EUR][1000 genomes]
rs72725157	0.86[EUR][1000 genomes]
rs72725159	0.82[EUR][1000 genomes]
rs72725165	0.85[EUR][1000 genomes]
rs72725168	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72725170	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72725172	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725173	0.80[EUR][1000 genomes]
rs72725174	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725190	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006437	0.92[EUR][1000 genomes]
rs8006492	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011621	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8013677	0.92[EUR][1000 genomes]
rs8014000	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015128	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8016525	0.92[EUR][1000 genomes]
rs8020795	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8021404	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8022206	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9323501	0.87[EUR][1000 genomes]
rs9323502	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9672142	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68499400-68508400	Weak transcription	Fetal Kidney	kidney
2	chr14:68499800-68512600	Weak transcription	Adipose Nuclei	Adipose
3	chr14:68499800-68516200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68500600-68507400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:68501200-68507400	Weak transcription	Ovary	ovary
6	chr14:68501200-68508200	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:68503000-68507600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:68503000-68508200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:68503400-68509200	Weak transcription	Fetal Intestine Small	intestine
10	chr14:68503400-68509200	Weak transcription	Stomach Mucosa	stomach
11	chr14:68503600-68519800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:68505200-68508000	Weak transcription	Fetal Lung	lung
13	chr14:68505400-68507400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:68505600-68508000	Weak transcription	Fetal Stomach	stomach
15	chr14:68506400-68507200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:68506400-68507200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr14:68506400-68511000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:68506400-68511200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr14:68506600-68507200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr14:68506600-68507600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr14:68506600-68508600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:68506600-68510400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:68506600-68511200	Enhancers	Colon Smooth Muscle	Colon
24	chr14:68506600-68512000	Weak transcription	HUVEC	blood vessel
25	chr14:68506800-68508400	Weak transcription	NHEK	skin
26	chr14:68506800-68509000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr14:68506800-68509000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:68506800-68511200	Enhancers	HUES64 Cell Line	embryonic stem cell

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