Variant report

Variant	rs72725151
Chromosome Location	chr14:68466362-68466363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr14:68466083-68467472	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr14:68465985-68467169	A549	lung:	n/a	chr14:68466305-68466316
3	CEBPB	chr14:68465996-68466517	HCT-116	colon:	n/a	chr14:68466305-68466316
4	GATA3	chr14:68466064-68467334	A549	lung:	n/a	chr14:68467009-68467020 chr14:68467013-68467022
5	GATA3	chr14:68465999-68467615	SK-N-SH	brain:	n/a	chr14:68467009-68467020 chr14:68467013-68467022
6	SP1	chr14:68466355-68467199	A549	lung:	n/a	n/a
7	CEBPB	chr14:68466135-68466481	IMR90	lung:	n/a	chr14:68466305-68466316
8	CEBPB	chr14:68465977-68467080	Hela-S3	cervix:	n/a	chr14:68466305-68466316
9	RAD21	chr14:68466061-68466396	Hela-S3	cervix:	n/a	n/a
10	TCF7L2	chr14:68465893-68466980	Hela-S3	cervix:	n/a	n/a
11	JUND	chr14:68466010-68467370	Hela-S3	cervix:	n/a	n/a
12	TCF7L2	chr14:68466129-68466393	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr14:68466219-68466425	HepG2	liver:	n/a	chr14:68466305-68466316
14	EP300	chr14:68466043-68466461	Hela-S3	cervix:	n/a	n/a
15	STAT3	chr14:68466012-68466421	Hela-S3	cervix:	n/a	n/a
16	MXI1	chr14:68466073-68466454	Hela-S3	cervix:	n/a	n/a
17	MAFK	chr14:68466105-68467194	Hela-S3	cervix:	n/a	chr14:68466990-68467005

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68456038..68458052-chr14:68464435..68466851,2	MCF-7	breast:

Variant related genes	Relation type
RAD51B	TF binding region

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10129355	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10129612	0.83[EUR][1000 genomes]
rs10130829	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10132022	0.84[EUR][1000 genomes]
rs10133262	0.88[EUR][1000 genomes]
rs10133883	0.86[EUR][1000 genomes]
rs10136129	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10136174	0.83[EUR][1000 genomes]
rs10136790	0.88[EUR][1000 genomes]
rs10136868	0.84[EUR][1000 genomes]
rs10139548	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10140097	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10140282	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10143455	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10143843	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10144995	0.83[EUR][1000 genomes]
rs10151387	0.81[EUR][1000 genomes]
rs1033686	0.81[EUR][1000 genomes]
rs10467735	0.88[EUR][1000 genomes]
rs11158700	0.87[ASN][1000 genomes]
rs11158701	0.87[ASN][1000 genomes]
rs11158715	0.83[EUR][1000 genomes]
rs11158716	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158717	0.81[EUR][1000 genomes]
rs11158718	0.87[ASN][1000 genomes]
rs11621638	0.90[EUR][1000 genomes]
rs11622135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622243	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11622787	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11623355	0.86[EUR][1000 genomes]
rs11623984	0.86[EUR][1000 genomes]
rs11624484	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11624609	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11626280	0.87[EUR][1000 genomes]
rs11626332	0.87[ASN][1000 genomes]
rs11629073	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11844529	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11846344	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11848187	0.85[EUR][1000 genomes]
rs11848769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850191	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11850946	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852180	0.88[EUR][1000 genomes]
rs11852208	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100584	0.88[EUR][1000 genomes]
rs12431490	0.87[ASN][1000 genomes]
rs12431697	0.82[EUR][1000 genomes]
rs12432558	0.87[ASN][1000 genomes]
rs12432681	0.86[EUR][1000 genomes]
rs12433779	0.86[ASN][1000 genomes]
rs12434751	0.87[ASN][1000 genomes]
rs12435554	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436203	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437178	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12437276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13329056	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104764	0.88[EUR][1000 genomes]
rs17104776	0.80[EUR][1000 genomes]
rs17104800	0.83[EUR][1000 genomes]
rs17192558	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.86[EUR][1000 genomes]
rs1980655	0.86[EUR][1000 genomes]
rs2009191	0.83[EUR][1000 genomes]
rs2038565	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2093358	0.84[EUR][1000 genomes]
rs2208596	0.89[EUR][1000 genomes]
rs28444723	0.83[EUR][1000 genomes]
rs28470365	0.85[EUR][1000 genomes]
rs28474827	0.82[EUR][1000 genomes]
rs28474995	0.86[EUR][1000 genomes]
rs28488544	0.88[EUR][1000 genomes]
rs28509330	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28649231	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28713367	0.87[ASN][1000 genomes]
rs2877369	0.88[EUR][1000 genomes]
rs34588410	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34723132	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4436722	0.88[EUR][1000 genomes]
rs4902535	0.88[EUR][1000 genomes]
rs4902536	0.88[EUR][1000 genomes]
rs4902538	0.87[EUR][1000 genomes]
rs4902539	0.88[EUR][1000 genomes]
rs4902540	0.88[EUR][1000 genomes]
rs4902544	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57990032	0.89[EUR][1000 genomes]
rs58151429	0.83[EUR][1000 genomes]
rs60201005	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60471554	0.86[EUR][1000 genomes]
rs6573800	0.88[EUR][1000 genomes]
rs6573801	0.88[EUR][1000 genomes]
rs6573805	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573814	0.86[EUR][1000 genomes]
rs7142112	0.88[EUR][1000 genomes]
rs7142210	0.88[EUR][1000 genomes]
rs7142860	0.88[EUR][1000 genomes]
rs7145044	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145771	0.85[EUR][1000 genomes]
rs7146354	0.88[EUR][1000 genomes]
rs7150705	0.87[ASN][1000 genomes]
rs7150903	0.87[ASN][1000 genomes]
rs7151495	0.87[ASN][1000 genomes]
rs7151917	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154014	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154646	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7155097	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7155840	0.83[EUR][1000 genomes]
rs7155985	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157185	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7158544	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7160115	0.88[EUR][1000 genomes]
rs7161069	0.86[EUR][1000 genomes]
rs72725127	0.87[ASN][1000 genomes]
rs72725138	0.87[EUR][1000 genomes]
rs72725141	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725153	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725154	0.90[EUR][1000 genomes]
rs72725156	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725157	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725158	0.90[EUR][1000 genomes]
rs72725159	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725160	0.90[EUR][1000 genomes]
rs72725163	0.90[EUR][1000 genomes]
rs72725165	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725168	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725170	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725172	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725173	0.85[EUR][1000 genomes]
rs72725174	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72725183	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725185	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725186	0.87[ASN][1000 genomes]
rs72725187	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725188	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs764088	0.87[ASN][1000 genomes]
rs8006437	0.88[EUR][1000 genomes]
rs8006492	0.86[EUR][1000 genomes]
rs8013677	0.88[EUR][1000 genomes]
rs8015128	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8016525	0.88[EUR][1000 genomes]
rs8020795	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8021404	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022206	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9323501	0.83[EUR][1000 genomes]
rs9672142	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68465000-68466600	Enhancers	Hela-S3	cervix
2	chr14:68465200-68466600	Enhancers	A549	lung
3	chr14:68465200-68468000	Enhancers	Fetal Lung	lung
4	chr14:68465200-68468400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68465400-68466600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:68465400-68466800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:68465400-68466800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:68465400-68467600	Enhancers	Fetal Intestine Large	intestine
9	chr14:68465400-68467600	Enhancers	Fetal Intestine Small	intestine
10	chr14:68465600-68466400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:68465600-68466400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:68465600-68466600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:68465600-68466600	Enhancers	HSMMtube	muscle
14	chr14:68465600-68466600	Enhancers	NHLF	lung
15	chr14:68465600-68466800	Enhancers	NHEK	skin
16	chr14:68465600-68467200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:68465600-68467600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:68465600-68467600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:68465600-68467600	Enhancers	Fetal Kidney	kidney
20	chr14:68465600-68467600	Enhancers	HMEC	breast
21	chr14:68465600-68467600	Enhancers	NHDF-Ad	bronchial
22	chr14:68465600-68468000	Enhancers	HSMM	muscle
23	chr14:68465800-68466600	Enhancers	NH-A	brain
24	chr14:68465800-68466800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr14:68465800-68467600	Enhancers	Colon Smooth Muscle	Colon
26	chr14:68465800-68467600	Enhancers	Rectal Smooth Muscle	rectum
27	chr14:68466000-68466400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr14:68466000-68466600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:68466000-68466600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:68466000-68466800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:68466000-68467000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr14:68466200-68466600	Enhancers	Osteobl	bone
33	chr14:68466200-68467000	Weak transcription	Duodenum Mucosa	Duodenum

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