Variant report

Variant	rs11626280
Chromosome Location	chr14:68398551-68398552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68327408..68329079-chr14:68398161..68400444,2	MCF-7	breast:

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10129355	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10129612	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10130829	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10132022	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10133262	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133883	0.91[EUR][1000 genomes]
rs10136129	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136174	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136790	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136868	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10139548	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10140097	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140282	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143455	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143843	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144995	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10148527	0.98[ASN][1000 genomes]
rs10151115	0.83[EUR][1000 genomes]
rs10151387	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10467735	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1080956	0.83[EUR][1000 genomes]
rs1080957	0.83[EUR][1000 genomes]
rs1080958	0.83[EUR][1000 genomes]
rs10873210	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158715	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158716	0.85[EUR][1000 genomes]
rs11158717	0.86[EUR][1000 genomes]
rs11622135	0.87[EUR][1000 genomes]
rs11622243	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622787	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623355	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11623984	0.91[EUR][1000 genomes]
rs11624609	0.86[EUR][1000 genomes]
rs11844529	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11846344	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11848187	0.87[EUR][1000 genomes]
rs11848769	0.87[EUR][1000 genomes]
rs11850191	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11850946	0.88[EUR][1000 genomes]
rs11852180	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852208	0.86[EUR][1000 genomes]
rs12100584	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431697	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432681	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12435554	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12437178	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437276	0.87[EUR][1000 genomes]
rs13329056	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1548264	0.83[AFR][1000 genomes]
rs17104764	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104776	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104800	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192558	0.88[EUR][1000 genomes]
rs17192586	0.88[EUR][1000 genomes]
rs17783304	0.88[EUR][1000 genomes]
rs1950767	0.98[ASN][1000 genomes]
rs1980654	0.91[EUR][1000 genomes]
rs1980655	0.91[EUR][1000 genomes]
rs2009191	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038565	0.84[EUR][1000 genomes]
rs2093358	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2208596	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28444723	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470365	0.83[EUR][1000 genomes]
rs28474827	0.84[EUR][1000 genomes]
rs28474995	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28488544	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509330	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28649231	0.81[AMR][1000 genomes]
rs2877369	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855496	0.98[ASN][1000 genomes]
rs34588410	0.87[EUR][1000 genomes]
rs34723132	0.88[EUR][1000 genomes]
rs4436722	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899231	0.83[EUR][1000 genomes]
rs4899232	0.82[EUR][1000 genomes]
rs4902533	0.98[ASN][1000 genomes]
rs4902535	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902536	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902538	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902539	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902540	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902544	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902545	0.84[EUR][1000 genomes]
rs57990032	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58151429	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201005	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60415085	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60471554	0.91[EUR][1000 genomes]
rs6573800	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573805	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573814	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67566613	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7142112	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142210	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142860	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145044	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7145771	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146354	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150168	0.81[EUR][1000 genomes]
rs7151917	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154014	0.84[EUR][1000 genomes]
rs7154646	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155097	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155840	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155985	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7157185	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158544	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160115	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161069	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72725141	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725149	0.88[EUR][1000 genomes]
rs72725151	0.87[EUR][1000 genomes]
rs72725153	0.87[EUR][1000 genomes]
rs72725156	0.83[EUR][1000 genomes]
rs72725157	0.87[EUR][1000 genomes]
rs72725159	0.83[EUR][1000 genomes]
rs72725165	0.86[EUR][1000 genomes]
rs72725168	0.87[EUR][1000 genomes]
rs72725170	0.87[EUR][1000 genomes]
rs72725172	0.84[EUR][1000 genomes]
rs8006437	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006492	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8011621	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8013677	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015128	0.84[EUR][1000 genomes]
rs8016525	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020795	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021404	0.84[EUR][1000 genomes]
rs8022206	0.84[EUR][1000 genomes]
rs9323501	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672142	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68386600-68399800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:68392800-68399000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:68392800-68399200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68392800-68399400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68395400-68408000	Weak transcription	Ovary	ovary
6	chr14:68396000-68399800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:68396400-68399600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:68397400-68399800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:68397400-68400600	Weak transcription	Dnd41	blood
10	chr14:68397800-68400200	Weak transcription	Primary hematopoietic stem cells	blood

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