Variant report

Variant	rs11158716
Chromosome Location	chr14:68493158-68493159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68492413..68494672-chr14:68501248..68502997,2	MCF-7	breast:
2	chr14:68493009..68495162-chr14:68495354..68497279,2	MCF-7	breast:

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10129355	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10129612	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs10130829	0.86[EUR][1000 genomes]
rs10132022	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs10133262	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10133883	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10136129	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs10136174	0.81[EUR][1000 genomes]
rs10136790	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs10136868	0.83[EUR][1000 genomes]
rs10139548	0.85[EUR][1000 genomes]
rs10140097	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs10140282	0.86[EUR][1000 genomes]
rs10141638	1.00[JPT][hapmap]
rs10143455	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10143843	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs10144995	0.81[EUR][1000 genomes]
rs1033686	0.83[CEU][hapmap]
rs10467735	0.86[EUR][1000 genomes]
rs11158700	0.87[ASN][1000 genomes]
rs11158701	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11158715	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11158718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11621638	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11622135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622243	0.86[EUR][1000 genomes]
rs11622787	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11623355	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11623984	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11624484	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11624609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11626280	0.85[EUR][1000 genomes]
rs11626332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11629073	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11844529	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs11846344	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11848187	0.83[EUR][1000 genomes]
rs11848769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850191	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11850946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852180	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs11852208	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100584	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12431490	0.87[ASN][1000 genomes]
rs12431697	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs12432558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12432681	0.84[EUR][1000 genomes]
rs12433779	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12434751	0.87[ASN][1000 genomes]
rs12435554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436203	0.87[ASN][1000 genomes]
rs12437178	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs12437276	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437441	1.00[JPT][hapmap]
rs13329056	0.88[EUR][1000 genomes]
rs17104764	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs17104776	0.86[CEU][hapmap]
rs17104800	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs17192558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1980655	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2009191	0.81[EUR][1000 genomes]
rs2038565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2093358	0.83[EUR][1000 genomes]
rs2208596	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28444723	0.81[EUR][1000 genomes]
rs28470365	0.84[EUR][1000 genomes]
rs28474827	0.81[EUR][1000 genomes]
rs28474995	0.85[EUR][1000 genomes]
rs28488544	0.86[EUR][1000 genomes]
rs28509330	0.86[EUR][1000 genomes]
rs28649231	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28713367	0.87[ASN][1000 genomes]
rs2877369	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs34588410	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34723132	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4436722	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs4902535	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs4902536	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4902538	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4902539	0.86[EUR][1000 genomes]
rs4902540	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs4902544	0.88[EUR][1000 genomes]
rs57990032	0.88[EUR][1000 genomes]
rs58151429	0.81[EUR][1000 genomes]
rs60201005	0.88[EUR][1000 genomes]
rs60471554	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6573800	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573801	0.86[EUR][1000 genomes]
rs6573805	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs6573814	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7141160	1.00[JPT][hapmap]
rs7141450	1.00[JPT][hapmap]
rs7142112	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7142210	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs7142860	0.86[EUR][1000 genomes]
rs7145044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145771	0.84[EUR][1000 genomes]
rs7146354	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs7150705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7150903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7151495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7151917	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154014	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154646	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7155097	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7155840	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7155985	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157185	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7158544	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs7160115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs7161069	0.84[EUR][1000 genomes]
rs72725127	0.87[ASN][1000 genomes]
rs72725138	0.85[EUR][1000 genomes]
rs72725141	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725149	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725151	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725153	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725154	0.88[EUR][1000 genomes]
rs72725156	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725157	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725158	0.88[EUR][1000 genomes]
rs72725159	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725160	0.88[EUR][1000 genomes]
rs72725163	0.88[EUR][1000 genomes]
rs72725165	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725168	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725170	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725172	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725173	0.83[EUR][1000 genomes]
rs72725174	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72725183	0.87[ASN][1000 genomes]
rs72725185	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725186	0.87[ASN][1000 genomes]
rs72725187	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725188	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs764088	0.87[ASN][1000 genomes]
rs8006437	0.86[EUR][1000 genomes]
rs8006492	0.84[EUR][1000 genomes]
rs8013677	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs8015128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8016525	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs8020795	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8021404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9323501	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs9672142	0.85[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68480000-68495000	Weak transcription	Ovary	ovary
2	chr14:68483600-68493400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:68488400-68493800	Weak transcription	Osteobl	bone
4	chr14:68488400-68496800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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