Variant report

Variant	rs10135398
Chromosome Location	chr14:68985606-68985607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68971123..68974039-chr14:68984609..68986451,2	MCF-7	breast:
2	chr14:68985509..68988121-chr14:69256458..69258080,2	MCF-7	breast:
3	chr14:68984645..68986314-chr14:69279663..69281210,2	MCF-7	breast:
4	chr14:68968310..68970702-chr14:68984207..68986493,2	MCF-7	breast:
5	chr14:68720614..68722595-chr14:68984911..68987836,2	MCF-7	breast:
6	chr14:68938741..68940567-chr14:68984751..68988855,3	MCF-7	breast:
7	chr14:68984084..68986661-chr14:69258955..69262203,4	MCF-7	breast:
8	chr14:68960140..68963220-chr14:68983834..68986769,3	MCF-7	breast:
9	chr14:68933643..68938139-chr14:68984805..68987652,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10131789	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10132579	0.81[CEU][hapmap]
rs1023530	0.86[AMR][1000 genomes]
rs12882030	0.80[AMR][1000 genomes]
rs1541390	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2842333	0.84[CEU][hapmap]
rs8015246	0.94[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8021339	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
2	chr14:68976400-68985800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:68977600-68985800	Weak transcription	Osteobl	bone
4	chr14:68977600-68988400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:68980600-68986000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:68981400-68986000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:68981600-68985800	Weak transcription	A549	lung
8	chr14:68983000-68987000	Enhancers	Adipose Nuclei	Adipose
9	chr14:68983600-68985800	Enhancers	Colon Smooth Muscle	Colon
10	chr14:68983600-68986200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:68983600-68986400	Enhancers	Ovary	ovary
12	chr14:68983600-68991200	Enhancers	NHEK	skin
13	chr14:68983800-68986400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:68983800-68986400	Enhancers	Right Atrium	heart
15	chr14:68983800-68987400	Enhancers	Fetal Kidney	kidney
16	chr14:68983800-68991600	Enhancers	Fetal Muscle Leg	muscle
17	chr14:68983800-68991800	Enhancers	Fetal Stomach	stomach
18	chr14:68984000-68986400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr14:68984000-68986600	Enhancers	Fetal Thymus	thymus
20	chr14:68984000-68987400	Enhancers	Primary T cells from cord blood	blood
21	chr14:68984200-68986800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr14:68984200-68987000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr14:68984200-68990200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:68984200-68991200	Enhancers	Fetal Heart	heart
25	chr14:68984200-68991800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:68984400-68987000	Enhancers	Pancreas	Pancrea
27	chr14:68984600-68985800	Enhancers	Esophagus	oesophagus
28	chr14:68984600-68986000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr14:68984600-68986000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:68984600-68986000	Enhancers	Brain Angular Gyrus	brain
31	chr14:68984600-68986000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr14:68984600-68986200	Enhancers	Fetal Muscle Trunk	muscle
33	chr14:68984600-68986400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr14:68984600-68986400	Enhancers	Brain Substantia Nigra	brain
35	chr14:68984600-68986400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr14:68984600-68986400	Enhancers	Left Ventricle	heart
37	chr14:68984600-68986400	Enhancers	Psoas Muscle	Psoas
38	chr14:68984600-68986400	Enhancers	Small Intestine	intestine
39	chr14:68984600-68986600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr14:68984600-68987000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr14:68984600-68989600	Enhancers	Stomach Mucosa	stomach
42	chr14:68984600-68989800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr14:68984600-68990200	Enhancers	Primary B cells from peripheral blood	blood
44	chr14:68984600-68990200	Enhancers	Fetal Intestine Large	intestine
45	chr14:68984600-68990600	Enhancers	Fetal Intestine Small	intestine
46	chr14:68984600-68991400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr14:68984600-68991600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr14:68984600-68991800	Enhancers	Placenta	Placenta
49	chr14:68984800-68985800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr14:68984800-68986000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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