Variant report

Variant	rs8015246
Chromosome Location	chr14:68975391-68975392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68957700..68966900-chr14:68968037..68976020,15	MCF-7	breast:
2	chr14:68934261..68937173-chr14:68974215..68976515,2	MCF-7	breast:
3	chr14:68973059..68975623-chr14:68975838..68977423,2	MCF-7	breast:
4	chr14:68939074..68942142-chr14:68974708..68977098,3	MCF-7	breast:
5	chr14:68973167..68978172-chr14:69258473..69260680,4	MCF-7	breast:
6	chr14:68974039..68976954-chr14:68979393..68981766,3	MCF-7	breast:
7	chr14:68975208..68976075-chr14:69036359..69037291,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10131789	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10132579	0.87[CHB][hapmap]
rs10135398	0.94[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1541390	0.94[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8021339	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68965400-68976800	Enhancers	Fetal Thymus	thymus
2	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
3	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
5	chr14:68971000-68983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:68971400-68975400	Enhancers	Thymus	Thymus
7	chr14:68971800-68976200	Enhancers	Pancreas	Pancrea
8	chr14:68971800-68976800	Enhancers	Lung	lung
9	chr14:68971800-68981400	Enhancers	Fetal Muscle Trunk	muscle
10	chr14:68972000-68975400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:68972000-68975600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:68972000-68980200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:68972600-68975400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr14:68972600-68982000	Enhancers	Fetal Intestine Small	intestine
15	chr14:68972800-68975600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr14:68973000-68975400	Enhancers	Duodenum Mucosa	Duodenum
17	chr14:68973000-68975400	Enhancers	HepG2	liver
18	chr14:68973200-68976400	Weak transcription	Osteobl	bone
19	chr14:68973400-68975800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:68973400-68976000	Weak transcription	Right Atrium	heart
21	chr14:68973400-68976200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:68973400-68976400	Enhancers	Stomach Smooth Muscle	stomach
23	chr14:68973400-68976600	Weak transcription	Brain Germinal Matrix	brain
24	chr14:68973400-68976800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:68973400-68977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr14:68973400-68979200	Weak transcription	Right Ventricle	heart
27	chr14:68973400-68981200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:68973400-68985000	Weak transcription	Colonic Mucosa	Colon
29	chr14:68973600-68975800	Weak transcription	NHLF	lung
30	chr14:68973600-68976000	Weak transcription	Adipose Nuclei	Adipose
31	chr14:68973600-68976200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:68973600-68976200	Weak transcription	HSMM	muscle
33	chr14:68973600-68976400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr14:68973600-68976600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:68973600-68976600	Weak transcription	Left Ventricle	heart
36	chr14:68973600-68977600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:68973800-68976200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:68973800-68976200	Weak transcription	NH-A	brain
39	chr14:68973800-68976800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:68973800-68984600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr14:68974000-68975400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:68974000-68975400	Enhancers	Spleen	Spleen
43	chr14:68974000-68975800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:68974000-68976000	Weak transcription	Fetal Heart	heart
45	chr14:68974000-68976000	Weak transcription	Fetal Kidney	kidney
46	chr14:68974000-68976800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:68974200-68975800	Weak transcription	Placenta	Placenta
48	chr14:68974200-68977000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:68974200-68977200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:68974200-68977400	Enhancers	Primary T cells fromperipheralblood	blood

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