Variant report

Variant	rs10135810
Chromosome Location	chr14:21206055-21206056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21203729..21206173-chr14:21222860..21224894,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10131142	0.85[CEU][hapmap]
rs2873980	0.85[CEU][hapmap]
rs58034818	0.95[EUR][1000 genomes]
rs66533269	0.95[EUR][1000 genomes]
rs66804581	0.95[EUR][1000 genomes]
rs72661313	0.95[EUR][1000 genomes]
rs72661316	0.95[EUR][1000 genomes]
rs72661318	0.91[EUR][1000 genomes]
rs72661321	0.95[EUR][1000 genomes]
rs72661323	0.95[EUR][1000 genomes]
rs72661336	0.98[EUR][1000 genomes]
rs72661340	0.83[EUR][1000 genomes]
rs73574101	0.81[EUR][1000 genomes]
rs8011190	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8012895	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8018673	0.95[EUR][1000 genomes]
rs9671404	0.95[EUR][1000 genomes]
rs9671506	0.95[EUR][1000 genomes]
rs9671507	0.95[EUR][1000 genomes]
rs9671539	0.95[EUR][1000 genomes]
rs9671547	0.95[EUR][1000 genomes]
rs9672000	0.95[EUR][1000 genomes]
rs9672003	0.95[EUR][1000 genomes]
rs9672117	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv901470	chr14:21203159-21244696	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21195400-21209400	Weak transcription	Gastric	stomach

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