Variant report

Variant	rs66804581
Chromosome Location	chr14:21201884-21201885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10135810	0.95[EUR][1000 genomes]
rs58034818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66533269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72661313	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72661316	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72661318	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72661321	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72661323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72661336	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73574101	0.82[EUR][1000 genomes]
rs8011190	1.00[EUR][1000 genomes]
rs8012895	1.00[EUR][1000 genomes]
rs8018673	1.00[EUR][1000 genomes]
rs9671404	1.00[EUR][1000 genomes]
rs9671506	1.00[EUR][1000 genomes]
rs9671507	1.00[EUR][1000 genomes]
rs9671539	1.00[EUR][1000 genomes]
rs9671547	1.00[EUR][1000 genomes]
rs9672000	1.00[EUR][1000 genomes]
rs9672003	1.00[EUR][1000 genomes]
rs9672117	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21195400-21209400	Weak transcription	Gastric	stomach
2	chr14:21199000-21203800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:21200600-21204000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:21200800-21202000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:21200800-21202000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr14:21201400-21203000	Enhancers	Primary B cells from cord blood	blood
7	chr14:21201400-21203200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:21201600-21202000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:21201600-21202000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:21201600-21202000	Enhancers	Pancreas	Pancrea
11	chr14:21201600-21202800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:21201800-21202000	Enhancers	Primary hematopoietic stem cells	blood
13	chr14:21201800-21202000	Enhancers	Colon Smooth Muscle	Colon
14	chr14:21201800-21202600	Weak transcription	Left Ventricle	heart
15	chr14:21201800-21202800	Weak transcription	Right Atrium	heart

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