Variant report

Variant	rs10137070
Chromosome Location	chr14:65396727-65396728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65395801..65398640-chr14:65409977..65412797,2	K562	blood:
2	chr14:65379584..65383779-chr14:65391377..65398715,8	MCF-7	breast:
3	chr14:65380964..65382777-chr14:65396306..65398912,2	MCF-7	breast:
4	chr14:65390108..65393668-chr14:65396173..65398724,3	MCF-7	breast:
5	chr14:65394304..65397990-chr14:65402248..65406876,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10129479	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10131002	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132858	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133054	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133290	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138534	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10139079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10139435	0.90[AFR][1000 genomes]
rs10139595	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10141986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10142016	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10142379	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10143017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144942	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10146885	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10147758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10148687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10149617	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10151701	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12172810	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102298	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17880380	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17881498	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147615	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2412065	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28451373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28508270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3949937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899153	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902333	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902338	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902340	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902341	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902345	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902346	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67330703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144811	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7153503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7153990	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154406	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7160518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8943	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8984	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9281	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs10137070	CHURC1	cis	Adipose Subcutaneous	GTEx
rs10137070	CHURC1	cis	Esophagus Muscularis	GTEx
rs10137070	CHURC1	cis	Artery Aorta	GTEx
rs10137070	CHURC1	cis	multi-tissue	Pritchard
rs10137070	CHURC1	cis	Thyroid	GTEx
rs10137070	CHURC1	cis	Muscle Skeletal	GTEx
rs10137070	CHURC1	cis	Whole Blood	GTEx
rs10137070	CHURC1	cis	Skin Sun Exposed Lower leg	GTEx
rs10137070	CHURC1	cis	Artery Tibial	GTEx
rs10137070	CHURC1	cis	Nerve Tibial	GTEx
rs10137070	CHURC1	cis	Esophagus Mucosa	GTEx
rs10137070	CHURC1	cis	lung	GTEx
rs10137070	CHURC1	cis	Heart Left Ventricle	GTEx
rs10137070	CHURC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65399200	Weak transcription	Esophagus	oesophagus
2	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
6	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
7	chr14:65383000-65419400	Weak transcription	K562	blood
8	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:65384400-65404800	Weak transcription	Gastric	stomach
10	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:65390200-65399200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:65390400-65398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:65390600-65397200	Strong transcription	Fetal Intestine Large	intestine
14	chr14:65390600-65398000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:65390600-65400400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:65390600-65400600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:65390600-65401800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr14:65390800-65401200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:65390800-65401400	Strong transcription	Placenta	Placenta
22	chr14:65390800-65401600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:65390800-65401800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:65390800-65402400	Strong transcription	Osteobl	bone
25	chr14:65390800-65403200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:65390800-65407000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr14:65391800-65400600	Strong transcription	A549	lung
28	chr14:65392800-65401600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:65393000-65398200	Strong transcription	Lung	lung
30	chr14:65393200-65398200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr14:65393400-65400000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:65393400-65400800	Weak transcription	Ovary	ovary
33	chr14:65393400-65404000	Weak transcription	Right Ventricle	heart
34	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:65393800-65398800	Weak transcription	Left Ventricle	heart
36	chr14:65393800-65404600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:65393800-65409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:65394200-65403600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:65394400-65397000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:65394400-65397600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:65394600-65397000	Genic enhancers	Fetal Thymus	thymus
42	chr14:65394800-65397600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:65395000-65396800	Weak transcription	Small Intestine	intestine
44	chr14:65395000-65398600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:65395200-65397000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr14:65395200-65397200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:65395200-65398000	Weak transcription	Colonic Mucosa	Colon
48	chr14:65395200-65398800	Weak transcription	Brain Germinal Matrix	brain
49	chr14:65395400-65404600	Weak transcription	Fetal Intestine Small	intestine
50	chr14:65395600-65396800	Weak transcription	HSMMtube	muscle

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