Variant report

Variant	rs10146885
Chromosome Location	chr14:65401819-65401820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65398098..65401847-chr14:65402918..65405946,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FNTB-1	chr14:65400531-65402086	NONHSAT037358

Extended variants
information (count: 54 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10129479	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10131002	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10132396	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10132742	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10132858	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10133054	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10133290	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10137070	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10138534	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10139079	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10139595	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10141986	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10142016	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10142379	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10143017	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10144942	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10147758	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10148687	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10149617	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10151701	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11158569	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12172810	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17102298	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17880380	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17881498	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2147615	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2412065	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28451373	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28508270	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3949937	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899152	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899153	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902332	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902333	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902335	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902336	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902337	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902338	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902340	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902341	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902343	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902345	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902346	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67330703	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6745	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7143764	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7144811	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153503	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153990	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7154406	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7160518	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8943	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8984	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9281	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs10146885	CHURC1	cis	Artery Aorta	GTEx
rs10146885	CHURC1	cis	Esophagus Muscularis	GTEx
rs10146885	CHURC1	cis	Skin Sun Exposed Lower leg	GTEx
rs10146885	CHURC1	Cis_1M	lymphoblastoid	RTeQTL
rs10146885	CHURC1	cis	Whole Blood	GTEx
rs10146885	CHURC1	cis	Thyroid	GTEx
rs10146885	CHURC1	cis	lung	GTEx
rs10146885	CHURC1	cis	Esophagus Mucosa	GTEx
rs10146885	CHURC1	cis	Muscle Skeletal	GTEx
rs10146885	CHURC1	cis	Adipose Subcutaneous	GTEx
rs10146885	CHURC1	cis	Nerve Tibial	GTEx
rs10146885	CHURC1	cis	Artery Tibial	GTEx
rs10146885	CHURC1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
5	chr14:65382800-65404200	Weak transcription	Stomach Mucosa	stomach
6	chr14:65383000-65419400	Weak transcription	K562	blood
7	chr14:65383800-65403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:65384400-65404800	Weak transcription	Gastric	stomach
9	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr14:65390800-65402400	Strong transcription	Osteobl	bone
13	chr14:65390800-65403200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:65390800-65407000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr14:65393400-65404000	Weak transcription	Right Ventricle	heart
16	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:65393800-65404600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:65393800-65409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:65394200-65403600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:65395400-65404600	Weak transcription	Fetal Intestine Small	intestine
21	chr14:65395600-65402600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:65395600-65403800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:65395800-65402200	Weak transcription	Psoas Muscle	Psoas
24	chr14:65395800-65402800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:65396000-65402200	Weak transcription	Brain Angular Gyrus	brain
26	chr14:65396000-65403600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:65396000-65403600	Weak transcription	Brain Substantia Nigra	brain
28	chr14:65396000-65405200	Weak transcription	Fetal Stomach	stomach
29	chr14:65396000-65409600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr14:65396000-65410400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
32	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:65396200-65404000	Weak transcription	Pancreas	Pancrea
34	chr14:65396200-65405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:65396200-65405600	Weak transcription	Spleen	Spleen
36	chr14:65396200-65408200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr14:65396600-65402600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr14:65396600-65406000	Weak transcription	NHDF-Ad	bronchial
39	chr14:65396800-65402400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:65397000-65402400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr14:65397000-65402600	Strong transcription	Fetal Thymus	thymus
42	chr14:65397000-65404000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:65397200-65402200	Strong transcription	GM12878-XiMat	blood
44	chr14:65397200-65402800	Strong transcription	Primary B cells from cord blood	blood
45	chr14:65397200-65407200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:65397400-65403400	Weak transcription	Fetal Heart	heart
47	chr14:65397400-65411200	Strong transcription	Dnd41	blood
48	chr14:65397800-65402200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr14:65397800-65405800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:65398000-65405200	Weak transcription	Fetal Muscle Trunk	muscle

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