Variant report

Variant	rs10137405
Chromosome Location	chr14:25450993-25450994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10131274	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10134818	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10151968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1062230	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11625143	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850957	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1555598	0.81[EUR][1000 genomes]
rs17185460	0.91[CEU][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs7143179	0.91[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7147250	0.88[ASN][1000 genomes]
rs7147314	0.91[ASN][1000 genomes]
rs7157481	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73595340	0.91[ASN][1000 genomes]
rs73595341	0.91[ASN][1000 genomes]
rs8009162	0.90[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs8011948	0.90[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9323580	0.83[CEU][hapmap];0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:25430000-25465800	Weak transcription	Lung	lung
3	chr14:25436200-25451200	Weak transcription	A549	lung
4	chr14:25436600-25454200	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:25436600-25454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:25436600-25455400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:25436800-25451200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:25441000-25454200	Weak transcription	Fetal Brain Male	brain
9	chr14:25443800-25451400	Weak transcription	Left Ventricle	heart
10	chr14:25443800-25451400	Weak transcription	HSMM	muscle
11	chr14:25444000-25451800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:25444200-25454600	Weak transcription	Right Atrium	heart
13	chr14:25445200-25454200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:25445400-25451600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:25445600-25454600	Weak transcription	Brain Anterior Caudate	brain
16	chr14:25446800-25452800	Enhancers	HepG2	liver
17	chr14:25448000-25453000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr14:25448400-25451200	Weak transcription	HSMMtube	muscle
19	chr14:25449000-25451400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:25449000-25451400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:25449200-25451200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr14:25449200-25454200	Weak transcription	Fetal Heart	heart
23	chr14:25449600-25451400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:25450000-25451200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:25450400-25451400	Weak transcription	Fetal Intestine Large	intestine
26	chr14:25450400-25451800	Enhancers	Pancreas	Pancrea
27	chr14:25450600-25451000	Weak transcription	Fetal Intestine Small	intestine
28	chr14:25450600-25451200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:25450600-25451400	Weak transcription	Fetal Lung	lung
30	chr14:25450600-25451400	Weak transcription	Right Ventricle	heart
31	chr14:25450800-25451800	Enhancers	Small Intestine	intestine

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