Variant report

Variant	rs17185460
Chromosome Location	chr14:25429598-25429599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10131274	0.82[CEU][hapmap];0.95[YRI][hapmap]
rs10132944	0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10137405	0.91[CEU][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes]
rs11159009	0.97[ASN][1000 genomes]
rs11625143	0.81[EUR][1000 genomes]
rs1555598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109366	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs7143179	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155878	0.80[ASN][1000 genomes]
rs7157481	0.86[CEU][hapmap];0.95[YRI][hapmap]
rs724116	0.80[ASN][1000 genomes]
rs8009162	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8011948	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8017710	0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs8021478	0.91[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs9323580	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25422600-25434000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:25425000-25429600	Enhancers	HSMMtube	muscle
4	chr14:25425200-25429600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:25426200-25430000	Enhancers	Brain Anterior Caudate	brain
6	chr14:25426400-25435000	Weak transcription	Aorta	Aorta
7	chr14:25426600-25430600	Enhancers	Fetal Intestine Small	intestine
8	chr14:25426800-25430600	Enhancers	Colon Smooth Muscle	Colon
9	chr14:25427000-25430000	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:25427000-25430400	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr14:25427000-25430600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:25427200-25430600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:25427200-25430600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:25427400-25430200	Enhancers	Brain Cingulate Gyrus	brain
15	chr14:25427400-25430600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:25427400-25430600	Enhancers	Fetal Intestine Large	intestine
17	chr14:25427400-25431000	Enhancers	Stomach Smooth Muscle	stomach
18	chr14:25427600-25430200	Enhancers	Brain Substantia Nigra	brain
19	chr14:25427800-25430400	Enhancers	Fetal Heart	heart
20	chr14:25427800-25430600	Enhancers	Fetal Stomach	stomach
21	chr14:25428000-25430000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:25428000-25430000	Enhancers	NHLF	lung
23	chr14:25428000-25430200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:25428000-25430400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr14:25428000-25430600	Enhancers	Brain Angular Gyrus	brain
26	chr14:25428200-25429600	Enhancers	Fetal Lung	lung
27	chr14:25428200-25430000	Enhancers	Duodenum Mucosa	Duodenum
28	chr14:25428200-25435000	Weak transcription	Osteobl	bone
29	chr14:25428400-25429600	Enhancers	Adipose Nuclei	Adipose
30	chr14:25428400-25429600	Enhancers	Right Atrium	heart
31	chr14:25428400-25430000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:25428400-25430000	Enhancers	Fetal Muscle Leg	muscle
33	chr14:25428400-25430000	Enhancers	Lung	lung
34	chr14:25428400-25430000	Enhancers	Psoas Muscle	Psoas
35	chr14:25428400-25430000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr14:25428400-25430000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr14:25428400-25430000	Enhancers	GM12878-XiMat	blood
38	chr14:25428400-25430200	Enhancers	Small Intestine	intestine
39	chr14:25428400-25430600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr14:25428400-25430600	Enhancers	Brain Hippocampus Middle	brain
41	chr14:25428600-25429600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:25428600-25430400	Enhancers	HepG2	liver
43	chr14:25428800-25430000	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr14:25428800-25434800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:25429000-25429600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr14:25429000-25430000	Enhancers	Liver	Liver
47	chr14:25429000-25430000	Enhancers	Left Ventricle	heart
48	chr14:25429000-25430000	Enhancers	Pancreas	Pancrea
49	chr14:25429000-25430000	Enhancers	Right Ventricle	heart
50	chr14:25429200-25429600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links