Variant report

Variant	rs10137665
Chromosome Location	chr14:64611872-64611873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64607215..64609430-chr14:64610944..64612562,2	MCF-7	breast:
2	chr14:64611735..64614161-chr14:64762430..64763965,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10047814	0.84[ASN][1000 genomes]
rs10047901	0.87[ASN][1000 genomes]
rs10136099	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136662	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10137370	0.87[ASN][1000 genomes]
rs10137426	0.82[ASN][1000 genomes]
rs10142318	0.90[ASN][1000 genomes]
rs10142480	0.90[ASN][1000 genomes]
rs10151446	0.87[ASN][1000 genomes]
rs11158531	0.91[ASN][1000 genomes]
rs11158532	0.90[ASN][1000 genomes]
rs11849394	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12147438	0.90[ASN][1000 genomes]
rs12587140	0.83[ASN][1000 genomes]
rs12587924	0.82[ASN][1000 genomes]
rs12590062	0.91[ASN][1000 genomes]
rs2184288	0.91[ASN][1000 genomes]
rs34994562	0.97[ASN][1000 genomes]
rs45472593	0.91[ASN][1000 genomes]
rs57018718	0.87[ASN][1000 genomes]
rs7140578	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7158393	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7159213	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7160091	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7161361	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8003196	0.91[ASN][1000 genomes]
rs8021831	0.82[ASN][1000 genomes]
rs8022222	0.83[EUR][1000 genomes]
rs8023139	0.91[ASN][1000 genomes]
rs9323446	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564906	chr14:64595673-64612858	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:64577800-64616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:64581400-64613400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
11	chr14:64584400-64616000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:64584600-64623000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:64585400-64613400	Weak transcription	HSMM	muscle
14	chr14:64585600-64615600	Strong transcription	Duodenum Mucosa	Duodenum
15	chr14:64585800-64614400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:64586400-64631800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:64586600-64614000	Weak transcription	Fetal Heart	heart
19	chr14:64590200-64634000	Weak transcription	HepG2	liver
20	chr14:64591000-64649000	Strong transcription	Liver	Liver
21	chr14:64593600-64615800	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr14:64593800-64613400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:64594800-64619600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr14:64597000-64626400	Weak transcription	Psoas Muscle	Psoas
27	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
28	chr14:64602200-64614200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:64603600-64613400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr14:64603600-64614400	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:64603600-64616400	Strong transcription	Fetal Intestine Large	intestine
32	chr14:64606200-64627200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:64606400-64613600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:64606600-64623000	Strong transcription	Thymus	Thymus
36	chr14:64608200-64614400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr14:64608200-64615000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:64608400-64615800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:64608400-64616000	Strong transcription	Colonic Mucosa	Colon
40	chr14:64608600-64612000	Strong transcription	Esophagus	oesophagus
41	chr14:64608600-64612200	Strong transcription	Aorta	Aorta
42	chr14:64608600-64613600	Strong transcription	Lung	lung
43	chr14:64608800-64623200	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:64609000-64615800	Strong transcription	Fetal Intestine Small	intestine
45	chr14:64609400-64613400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:64609800-64619600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr14:64609800-64633200	Weak transcription	Small Intestine	intestine
48	chr14:64609800-64636600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:64610000-64613000	Weak transcription	Rectal Smooth Muscle	rectum

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