Variant report

Variant	rs8023139
Chromosome Location	chr14:64600127-64600128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047814	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10047815	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs10047901	0.96[ASN][1000 genomes]
rs10136099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10136662	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10137370	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10137426	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10137665	0.91[ASN][1000 genomes]
rs10142318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10142480	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10151446	0.90[ASN][1000 genomes]
rs11158531	1.00[ASN][1000 genomes]
rs11158532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11849394	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12147438	0.99[ASN][1000 genomes]
rs12587140	0.86[ASN][1000 genomes]
rs12587924	0.91[ASN][1000 genomes]
rs12590062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12590378	0.86[CHB][hapmap]
rs2184288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34994562	0.94[ASN][1000 genomes]
rs45472593	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57018718	0.96[ASN][1000 genomes]
rs57034528	0.81[ASN][1000 genomes]
rs7140578	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7158393	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159213	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160091	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161361	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8003196	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021831	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8022222	0.85[EUR][1000 genomes]
rs9323446	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564906	chr14:64595673-64612858	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:64577800-64616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:64579600-64611000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:64580600-64600200	Weak transcription	Stomach Mucosa	stomach
9	chr14:64581400-64613400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr14:64583600-64605400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:64583600-64611800	Strong transcription	Dnd41	blood
14	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
15	chr14:64584400-64616000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:64584600-64607000	Weak transcription	HUVEC	blood vessel
17	chr14:64584600-64623000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:64584800-64605400	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr14:64585400-64613400	Weak transcription	HSMM	muscle
20	chr14:64585600-64607400	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:64585600-64615600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr14:64585800-64614400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:64586200-64602600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:64586400-64631800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:64586600-64603800	Weak transcription	HSMMtube	muscle
27	chr14:64586600-64614000	Weak transcription	Fetal Heart	heart
28	chr14:64587200-64601200	Strong transcription	Ovary	ovary
29	chr14:64587600-64601400	Strong transcription	Fetal Muscle Leg	muscle
30	chr14:64587800-64601400	Strong transcription	Fetal Intestine Large	intestine
31	chr14:64588200-64601400	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:64588800-64611600	Strong transcription	Primary T cells from cord blood	blood
33	chr14:64590200-64634000	Weak transcription	HepG2	liver
34	chr14:64590400-64608800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr14:64591000-64649000	Strong transcription	Liver	Liver
36	chr14:64591200-64601400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:64591600-64602600	Strong transcription	GM12878-XiMat	blood
38	chr14:64591800-64601200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:64591800-64601400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:64592000-64600400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:64592000-64601200	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:64592000-64604400	Strong transcription	Fetal Lung	lung
43	chr14:64592600-64608200	Weak transcription	Hela-S3	cervix
44	chr14:64592800-64608600	Weak transcription	Fetal Brain Male	brain
45	chr14:64593600-64608600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:64593600-64609000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:64593600-64615800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:64593800-64608600	Weak transcription	Small Intestine	intestine
49	chr14:64593800-64608800	Weak transcription	Colon Smooth Muscle	Colon
50	chr14:64593800-64613400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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