Variant report

Variant	rs1013837
Chromosome Location	chr4:79912587-79912588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10027611	1.00[ASN][1000 genomes]
rs10032332	1.00[ASN][1000 genomes]
rs1013838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1031935	1.00[ASN][1000 genomes]
rs1031937	1.00[ASN][1000 genomes]
rs11733844	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13124664	1.00[ASN][1000 genomes]
rs13147110	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13148274	1.00[ASN][1000 genomes]
rs1383421	1.00[ASN][1000 genomes]
rs1383422	1.00[ASN][1000 genomes]
rs1383429	1.00[ASN][1000 genomes]
rs1383430	0.90[ASN][1000 genomes]
rs1480721	1.00[ASN][1000 genomes]
rs1480722	1.00[ASN][1000 genomes]
rs1480723	1.00[ASN][1000 genomes]
rs1480724	1.00[ASN][1000 genomes]
rs1480725	1.00[ASN][1000 genomes]
rs1480726	1.00[ASN][1000 genomes]
rs1480727	1.00[ASN][1000 genomes]
rs1480731	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1545805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545806	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1545807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003530	0.90[ASN][1000 genomes]
rs17003541	1.00[ASN][1000 genomes]
rs2046105	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2867525	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2867530	1.00[ASN][1000 genomes]
rs4317225	1.00[ASN][1000 genomes]
rs4975154	0.90[ASN][1000 genomes]
rs59072712	0.90[ASN][1000 genomes]
rs6534104	1.00[ASN][1000 genomes]
rs6534105	1.00[ASN][1000 genomes]
rs6534106	1.00[ASN][1000 genomes]
rs6813518	0.81[AMR][1000 genomes]
rs6824311	1.00[ASN][1000 genomes]
rs6831645	1.00[ASN][1000 genomes]
rs6833235	1.00[ASN][1000 genomes]
rs6836381	1.00[ASN][1000 genomes]
rs6852379	1.00[ASN][1000 genomes]
rs7687681	0.81[ASN][1000 genomes]
rs899900	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs985893	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3448470	chr4:79898340-80026510	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv432614	chr4:79910989-79993822	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79905000-79917600	Weak transcription	Aorta	Aorta
2	chr4:79911400-79915200	Weak transcription	Psoas Muscle	Psoas
3	chr4:79911600-79913000	Enhancers	Fetal Heart	heart
4	chr4:79912200-79912800	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links