Variant report

Variant	rs17003530
Chromosome Location	chr4:79908433-79908434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10027611	0.90[ASN][1000 genomes]
rs10032332	0.90[ASN][1000 genomes]
rs1013837	0.90[ASN][1000 genomes]
rs1013838	0.86[ASN][1000 genomes]
rs1031935	0.90[ASN][1000 genomes]
rs1031937	0.90[ASN][1000 genomes]
rs11733844	1.00[ASN][1000 genomes]
rs13124664	0.90[ASN][1000 genomes]
rs13147110	0.90[ASN][1000 genomes]
rs13148274	0.90[ASN][1000 genomes]
rs1383421	0.90[ASN][1000 genomes]
rs1383422	0.90[ASN][1000 genomes]
rs1383429	0.90[ASN][1000 genomes]
rs1383430	1.00[ASN][1000 genomes]
rs1480721	0.90[ASN][1000 genomes]
rs1480722	0.90[ASN][1000 genomes]
rs1480723	0.90[ASN][1000 genomes]
rs1480724	0.90[ASN][1000 genomes]
rs1480725	0.90[ASN][1000 genomes]
rs1480726	0.90[ASN][1000 genomes]
rs1480727	0.90[ASN][1000 genomes]
rs1480731	0.90[ASN][1000 genomes]
rs1545805	0.90[ASN][1000 genomes]
rs1545806	0.90[ASN][1000 genomes]
rs1545807	0.90[ASN][1000 genomes]
rs17003541	0.90[ASN][1000 genomes]
rs2046105	1.00[ASN][1000 genomes]
rs286479	0.95[EUR][1000 genomes]
rs286480	0.95[EUR][1000 genomes]
rs2867525	0.90[ASN][1000 genomes]
rs2867530	0.90[ASN][1000 genomes]
rs4317225	0.90[ASN][1000 genomes]
rs4975154	1.00[ASN][1000 genomes]
rs59072712	1.00[ASN][1000 genomes]
rs6534104	0.90[ASN][1000 genomes]
rs6534105	0.90[ASN][1000 genomes]
rs6534106	0.90[ASN][1000 genomes]
rs6824311	0.90[ASN][1000 genomes]
rs6831645	0.90[ASN][1000 genomes]
rs6833235	0.90[ASN][1000 genomes]
rs6836381	0.90[ASN][1000 genomes]
rs6852379	0.90[ASN][1000 genomes]
rs6853917	0.95[EUR][1000 genomes]
rs7687681	0.90[ASN][1000 genomes]
rs899900	0.90[ASN][1000 genomes]
rs985893	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3448470	chr4:79898340-80026510	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79905000-79917600	Weak transcription	Aorta	Aorta
2	chr4:79906800-79908600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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