Variant report

Variant	rs10138741
Chromosome Location	chr14:78284346-78284347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10873312	0.81[ASN][1000 genomes]
rs11159291	0.81[ASN][1000 genomes]
rs12878904	0.92[ASN][1000 genomes]
rs4899678	0.92[ASN][1000 genomes]
rs4903650	0.81[ASN][1000 genomes]
rs4903652	0.81[ASN][1000 genomes]
rs4903653	0.81[ASN][1000 genomes]
rs7401295	0.81[ASN][1000 genomes]
rs9323653	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78267200-78284800	Weak transcription	Brain Angular Gyrus	brain
2	chr14:78267200-78285200	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:78267200-78285200	Weak transcription	Fetal Stomach	stomach
4	chr14:78267200-78285400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:78267200-78285400	Weak transcription	Lung	lung
6	chr14:78267200-78288200	Weak transcription	Spleen	Spleen
7	chr14:78267200-78288800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:78267200-78304200	Weak transcription	HSMMtube	muscle
9	chr14:78267200-78310800	Weak transcription	Esophagus	oesophagus
10	chr14:78267400-78285000	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:78267400-78285000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:78267400-78285200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:78267400-78285400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:78267600-78285000	Weak transcription	Primary T cells from cord blood	blood
15	chr14:78267600-78285400	Weak transcription	Brain Substantia Nigra	brain
16	chr14:78267800-78285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:78270800-78288400	Weak transcription	Fetal Intestine Small	intestine
18	chr14:78270800-78288800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:78272400-78285200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:78273000-78285400	Weak transcription	Psoas Muscle	Psoas
21	chr14:78273400-78285200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr14:78273400-78285400	Weak transcription	Left Ventricle	heart
23	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:78279400-78285400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:78280000-78287600	Weak transcription	K562	blood
26	chr14:78280600-78285600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:78280800-78285400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:78281200-78285400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr14:78281600-78285200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr14:78282000-78285200	Weak transcription	Aorta	Aorta
31	chr14:78282000-78285200	Weak transcription	Dnd41	blood
32	chr14:78282400-78285400	Weak transcription	Right Ventricle	heart
33	chr14:78282800-78284600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:78282800-78284800	Weak transcription	Adipose Nuclei	Adipose
35	chr14:78282800-78285400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr14:78282800-78285400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr14:78282800-78285400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:78282800-78288600	Weak transcription	Pancreas	Pancrea
39	chr14:78283000-78285200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:78283000-78285400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr14:78283000-78293400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:78283200-78284800	Weak transcription	Fetal Muscle Leg	muscle
43	chr14:78283200-78285000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:78283200-78285000	Weak transcription	Primary B cells from cord blood	blood
45	chr14:78283200-78285200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr14:78283200-78285600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:78283200-78301800	Weak transcription	Small Intestine	intestine
48	chr14:78283400-78285200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr14:78283400-78285200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:78283400-78285200	Weak transcription	Fetal Brain Female	brain

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