Variant report

Variant	rs10138850
Chromosome Location	chr14:67606768-67606769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67601986..67604239-chr14:67605859..67608137,2	K562	blood:
2	chr14:67605438..67607246-chr14:67649867..67652399,2	K562	blood:

Extended variants
information (count: 162 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10129779	0.81[JPT][hapmap]
rs10131212	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs10131984	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10132088	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10133107	0.83[AMR][1000 genomes]
rs10134592	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10135903	0.82[JPT][hapmap]
rs10136622	0.89[AMR][1000 genomes]
rs10138824	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs10138865	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138952	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10139792	0.94[ASN][1000 genomes]
rs10140817	0.82[JPT][hapmap]
rs10141879	0.85[CHD][hapmap];0.90[JPT][hapmap]
rs10141947	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10141952	0.85[ASN][1000 genomes]
rs10142059	0.83[AMR][1000 genomes]
rs10144090	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs10144371	0.90[ASN][1000 genomes]
rs10144401	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs10145508	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10145511	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10145586	0.81[JPT][hapmap]
rs10146663	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs10147362	0.90[EUR][1000 genomes]
rs10147852	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs10149600	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10149615	0.90[EUR][1000 genomes]
rs10150145	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10150902	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs10151464	0.82[JPT][hapmap]
rs10431718	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1044745	0.91[EUR][1000 genomes]
rs1045060	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs10459453	0.82[JPT][hapmap]
rs10483793	0.84[ASN][1000 genomes]
rs1073605	0.85[AMR][1000 genomes]
rs1073607	0.82[JPT][hapmap]
rs1078194	0.91[JPT][hapmap]
rs10873200	0.82[JPT][hapmap]
rs11158652	0.88[AMR][1000 genomes]
rs11158653	0.82[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158655	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1138802	0.81[EUR][1000 genomes]
rs12323494	0.81[JPT][hapmap]
rs12323911	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs12589218	0.82[JPT][hapmap]
rs12590689	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12590956	0.91[JPT][hapmap]
rs1318914	0.82[JPT][hapmap]
rs1473732	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1535491	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1546940	0.88[AMR][1000 genomes]
rs17104103	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs17104106	0.82[JPT][hapmap]
rs17104109	0.82[JPT][hapmap]
rs17104114	0.91[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs17104202	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17248252	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17248357	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17248421	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.82[MKK][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs17248526	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs17248616	0.80[JPT][hapmap]
rs1885589	0.81[JPT][hapmap]
rs1918483	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950282	0.83[AMR][1000 genomes]
rs1952337	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1955606	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2031564	0.83[EUR][1000 genomes]
rs2039055	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2057396	0.82[JPT][hapmap]
rs2064489	0.83[AMR][1000 genomes]
rs2146229	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs2146230	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs2236333	0.82[JPT][hapmap]
rs2274335	0.82[JPT][hapmap]
rs2281676	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2295903	0.93[ASN][1000 genomes]
rs2319777	0.91[EUR][1000 genomes]
rs28368552	0.95[ASN][1000 genomes]
rs28521373	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28662990	0.82[ASN][1000 genomes]
rs28718312	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3752993	0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap]
rs3784078	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3844530	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3866760	1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4636843	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58221168	0.89[ASN][1000 genomes]
rs60505324	0.83[EUR][1000 genomes]
rs61612119	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6573747	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6573748	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6573752	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573754	0.94[ASN][1000 genomes]
rs6573755	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.82[MKK][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs6573758	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6573760	1.00[CEU][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6573763	0.89[JPT][hapmap]
rs6573765	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6573768	0.90[EUR][1000 genomes]
rs7141519	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7145295	0.86[AMR][1000 genomes]
rs7146638	0.94[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.89[ASN][1000 genomes]
rs7147207	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7147534	0.88[ASN][1000 genomes]
rs7148044	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7148425	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149535	0.82[JPT][hapmap]
rs7149905	0.86[AMR][1000 genomes]
rs7150089	0.96[ASN][1000 genomes]
rs7150934	0.90[ASN][1000 genomes]
rs7151898	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7152217	0.93[ASN][1000 genomes]
rs7152231	0.89[ASN][1000 genomes]
rs7152903	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs7154905	0.86[ASN][1000 genomes]
rs7156119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157126	0.84[AMR][1000 genomes]
rs7157394	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7157418	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158228	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7161664	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73279056	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73280987	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7493580	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs768770	0.82[ASN][1000 genomes]
rs8003929	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8004148	0.91[CEU][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs8004488	1.00[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8004798	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8005981	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8006281	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8007696	0.90[EUR][1000 genomes]
rs8008236	0.82[JPT][hapmap]
rs8009087	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8009318	0.82[JPT][hapmap]
rs8010261	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8013724	0.82[ASN][1000 genomes]
rs8014966	0.82[JPT][hapmap]
rs8015819	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8015862	0.82[JPT][hapmap]
rs8016037	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs8019510	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8021098	0.89[AMR][1000 genomes]
rs8021896	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs9323490	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9323491	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9323492	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9323493	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9323494	0.91[ASN][1000 genomes]
rs9743911	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525460	chr14:66851185-67626594	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2829998	chr14:67103579-67626594	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv1841498	chr14:67434470-67634318	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv1838445	chr14:67600169-67634318	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10138850	FAM71D	cis	cerebellum	SCAN
rs10138850	EIF2S1	cis	multi-tissue	Pritchard
rs10138850	EIF2S1	cis	lymphoblastoid	seeQTL
rs10138850	ZFYVE26	cis	cerebellum	SCAN
rs10138850	EIF2S1	cis	brain	seeQTL

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67568000-67618400	Weak transcription	Gastric	stomach
2	chr14:67573000-67615200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:67573200-67619800	Weak transcription	HepG2	liver
4	chr14:67573400-67615000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:67580000-67622800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:67584200-67637400	Weak transcription	Pancreas	Pancrea
7	chr14:67586600-67607800	Weak transcription	Fetal Intestine Small	intestine
8	chr14:67588000-67639400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:67588400-67639200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:67588600-67638400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:67590200-67610000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr14:67590200-67610800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:67590200-67613800	Weak transcription	Psoas Muscle	Psoas
14	chr14:67590200-67617800	Weak transcription	Brain Angular Gyrus	brain
15	chr14:67590200-67618000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:67590200-67637400	Weak transcription	Aorta	Aorta
17	chr14:67590200-67638000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:67590400-67610000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:67590400-67614200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:67590400-67618000	Weak transcription	Brain Substantia Nigra	brain
21	chr14:67590800-67616400	Weak transcription	Dnd41	blood
22	chr14:67590800-67621400	Weak transcription	Right Ventricle	heart
23	chr14:67590800-67637600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:67591200-67618400	Weak transcription	Fetal Stomach	stomach
25	chr14:67591400-67612200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr14:67591400-67614200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr14:67591400-67640000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:67592200-67618400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:67592400-67609200	Weak transcription	Left Ventricle	heart
30	chr14:67592400-67612800	Weak transcription	Adipose Nuclei	Adipose
31	chr14:67597400-67609600	Weak transcription	Ovary	ovary
32	chr14:67597400-67616200	Weak transcription	Fetal Brain Female	brain
33	chr14:67598000-67609800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:67598200-67609400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:67598200-67612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:67598200-67620000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:67598800-67607400	Weak transcription	Liver	Liver
38	chr14:67599000-67607800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:67599800-67618000	Weak transcription	HSMM	muscle
40	chr14:67600800-67647400	Weak transcription	Fetal Kidney	kidney
41	chr14:67601000-67609600	Weak transcription	GM12878-XiMat	blood
42	chr14:67601000-67617400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:67601200-67610000	Weak transcription	Brain Hippocampus Middle	brain
44	chr14:67604600-67614400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:67606400-67612800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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