Variant report

Variant	rs61612119
Chromosome Location	chr14:67670548-67670549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67663302..67666275-chr14:67670215..67672411,3	K562	blood:

Variant related genes	Relation type
ENSG00000258988	Chromatin interaction
ENSG00000172717	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10130796	0.84[ASN][1000 genomes]
rs10131984	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10132093	0.94[EUR][1000 genomes]
rs10133107	0.81[EUR][1000 genomes]
rs10136622	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10138850	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10138865	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10138952	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10141692	0.86[ASN][1000 genomes]
rs10141947	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10142059	0.81[EUR][1000 genomes]
rs10144122	0.94[EUR][1000 genomes]
rs10145508	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10145511	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10147362	0.95[EUR][1000 genomes]
rs10149600	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10149615	0.95[EUR][1000 genomes]
rs10150082	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150145	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1044745	0.96[EUR][1000 genomes]
rs1073605	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1078194	0.84[ASN][1000 genomes]
rs10873200	0.85[ASN][1000 genomes]
rs11158652	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11158653	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158655	0.85[ASN][1000 genomes]
rs11158656	0.84[ASN][1000 genomes]
rs12586402	0.84[ASN][1000 genomes]
rs12590689	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12590956	0.86[ASN][1000 genomes]
rs1473732	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1546940	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17104103	0.92[ASN][1000 genomes]
rs17104106	0.85[ASN][1000 genomes]
rs17104109	0.84[ASN][1000 genomes]
rs17104114	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104202	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17248252	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17248456	0.86[ASN][1000 genomes]
rs17836683	0.80[ASN][1000 genomes]
rs1918483	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1918484	0.84[ASN][1000 genomes]
rs1950282	0.81[EUR][1000 genomes]
rs1955606	0.84[EUR][1000 genomes]
rs2031564	0.88[EUR][1000 genomes]
rs2039055	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2064489	0.80[EUR][1000 genomes]
rs2281676	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2296561	0.94[EUR][1000 genomes]
rs2319777	0.96[EUR][1000 genomes]
rs28521373	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28539317	0.81[EUR][1000 genomes]
rs28718312	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3784078	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3844530	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4636843	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59472119	0.86[ASN][1000 genomes]
rs59861720	0.88[ASN][1000 genomes]
rs60505324	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61024303	0.85[ASN][1000 genomes]
rs61281789	0.80[ASN][1000 genomes]
rs61749574	0.80[ASN][1000 genomes]
rs6573747	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6573748	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6573752	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6573758	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573760	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6573765	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6573768	0.95[EUR][1000 genomes]
rs67470433	0.84[ASN][1000 genomes]
rs7141519	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7145295	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7147207	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7148044	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7148425	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7149905	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7151898	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7156119	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7157126	0.81[EUR][1000 genomes]
rs7157394	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7157418	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7158228	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7161664	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73276994	0.88[ASN][1000 genomes]
rs73279056	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73280987	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73284892	0.95[EUR][1000 genomes]
rs7493580	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8003327	0.88[EUR][1000 genomes]
rs8003669	0.85[ASN][1000 genomes]
rs8003929	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8004148	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8004488	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8004798	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8005981	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8007696	0.95[EUR][1000 genomes]
rs8009087	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8010261	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8015819	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8019510	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8021098	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9323490	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9323491	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9323492	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9323493	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv983938	chr14:67656148-67670777	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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