Variant report

Variant	rs61024303
Chromosome Location	chr14:67673753-67673754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67670737..67673131-chr14:67673684..67677270,3	K562	blood:

Variant related genes	Relation type
ENSG00000172717	Chromatin interaction

Extended variants
information (count: 243 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:236)

rs_ID	r²[population]
rs10129185	0.98[EUR][1000 genomes]
rs10129779	0.89[ASN][1000 genomes]
rs10130796	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10131175	0.81[ASN][1000 genomes]
rs10131212	0.86[ASN][1000 genomes]
rs10135163	0.83[ASN][1000 genomes]
rs10135498	0.83[ASN][1000 genomes]
rs10135727	0.84[ASN][1000 genomes]
rs10135883	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10135903	0.87[ASN][1000 genomes]
rs10136710	0.83[ASN][1000 genomes]
rs10137026	0.85[ASN][1000 genomes]
rs10137557	0.83[ASN][1000 genomes]
rs10138319	0.81[AMR][1000 genomes]
rs10138392	0.80[ASN][1000 genomes]
rs10138755	0.84[ASN][1000 genomes]
rs10138824	0.86[ASN][1000 genomes]
rs10138932	0.86[ASN][1000 genomes]
rs10139585	0.81[ASN][1000 genomes]
rs10139684	0.81[ASN][1000 genomes]
rs10140817	0.87[ASN][1000 genomes]
rs10141180	0.95[EUR][1000 genomes]
rs10141692	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10141879	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10143251	0.81[ASN][1000 genomes]
rs10143916	0.89[ASN][1000 genomes]
rs10144090	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10144218	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10144401	0.87[ASN][1000 genomes]
rs10144417	0.83[ASN][1000 genomes]
rs10144774	1.00[EUR][1000 genomes]
rs10145586	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10145744	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10146389	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10146663	0.87[ASN][1000 genomes]
rs10146722	0.86[ASN][1000 genomes]
rs10147640	0.84[ASN][1000 genomes]
rs10147852	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10150082	0.92[ASN][1000 genomes]
rs10150902	0.87[ASN][1000 genomes]
rs10151464	0.87[ASN][1000 genomes]
rs10152002	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1044750	0.84[ASN][1000 genomes]
rs1045060	0.84[ASN][1000 genomes]
rs10459453	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10459529	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10459530	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10459531	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1073604	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1073606	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1073607	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1078194	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10873200	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113973	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11158655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158656	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11158658	0.91[ASN][1000 genomes]
rs12323494	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12323793	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12323911	0.91[ASN][1000 genomes]
rs12586402	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12586552	0.87[ASN][1000 genomes]
rs12586609	0.86[ASN][1000 genomes]
rs12588292	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12588355	0.86[ASN][1000 genomes]
rs12588388	0.86[ASN][1000 genomes]
rs12588478	0.83[ASN][1000 genomes]
rs12589091	0.84[ASN][1000 genomes]
rs12589218	0.91[ASN][1000 genomes]
rs12589325	0.90[ASN][1000 genomes]
rs12589606	0.86[ASN][1000 genomes]
rs12589671	0.82[ASN][1000 genomes]
rs12589983	0.86[ASN][1000 genomes]
rs12590065	0.95[EUR][1000 genomes]
rs12590952	0.86[ASN][1000 genomes]
rs12590956	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1318914	0.90[ASN][1000 genomes]
rs13379142	0.83[ASN][1000 genomes]
rs13379368	0.83[ASN][1000 genomes]
rs1473733	0.87[ASN][1000 genomes]
rs1475127	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1475128	0.86[ASN][1000 genomes]
rs1475129	0.86[ASN][1000 genomes]
rs1535489	0.89[ASN][1000 genomes]
rs1535490	0.89[ASN][1000 genomes]
rs1535491	0.89[ASN][1000 genomes]
rs1536271	0.83[ASN][1000 genomes]
rs1536272	0.83[ASN][1000 genomes]
rs1536273	0.83[ASN][1000 genomes]
rs17093616	0.87[ASN][1000 genomes]
rs17104103	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104106	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104109	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17104114	0.91[ASN][1000 genomes]
rs17104188	0.91[ASN][1000 genomes]
rs17104223	0.87[ASN][1000 genomes]
rs17104224	0.87[ASN][1000 genomes]
rs17248456	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17248526	0.91[ASN][1000 genomes]
rs17248567	0.89[ASN][1000 genomes]
rs17248616	0.86[ASN][1000 genomes]
rs17248714	0.82[ASN][1000 genomes]
rs17564263	0.86[ASN][1000 genomes]
rs17836683	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17836702	0.86[ASN][1000 genomes]
rs1881035	0.80[ASN][1000 genomes]
rs1885589	0.86[ASN][1000 genomes]
rs1885590	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1918484	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1980817	0.82[ASN][1000 genomes]
rs2025208	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2025209	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2031563	0.84[ASN][1000 genomes]
rs2057396	0.86[ASN][1000 genomes]
rs2094162	1.00[EUR][1000 genomes]
rs2146229	0.89[ASN][1000 genomes]
rs2146230	0.91[ASN][1000 genomes]
rs2236333	0.86[ASN][1000 genomes]
rs2274335	0.84[ASN][1000 genomes]
rs2274336	0.84[ASN][1000 genomes]
rs2274338	0.84[ASN][1000 genomes]
rs2296560	0.84[ASN][1000 genomes]
rs28370351	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28401319	0.91[ASN][1000 genomes]
rs28405138	0.84[ASN][1000 genomes]
rs28411190	0.90[ASN][1000 genomes]
rs28422832	0.84[ASN][1000 genomes]
rs28424592	0.91[ASN][1000 genomes]
rs28456209	0.82[ASN][1000 genomes]
rs28458235	0.86[ASN][1000 genomes]
rs28472807	0.87[ASN][1000 genomes]
rs28522593	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28522922	0.88[ASN][1000 genomes]
rs28558916	0.83[ASN][1000 genomes]
rs28562402	0.90[ASN][1000 genomes]
rs28584286	0.87[ASN][1000 genomes]
rs28607485	0.89[ASN][1000 genomes]
rs28617290	0.88[ASN][1000 genomes]
rs28668536	0.84[ASN][1000 genomes]
rs28696352	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28706091	0.86[ASN][1000 genomes]
rs3759755	0.83[ASN][1000 genomes]
rs3784081	0.89[ASN][1000 genomes]
rs3784085	0.91[EUR][1000 genomes]
rs3809387	0.86[ASN][1000 genomes]
rs3818467	0.84[ASN][1000 genomes]
rs3825722	0.84[ASN][1000 genomes]
rs4058254	0.86[ASN][1000 genomes]
rs45612334	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57025434	0.89[ASN][1000 genomes]
rs57234033	0.81[ASN][1000 genomes]
rs57266997	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57782535	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58257525	0.86[EUR][1000 genomes]
rs58809332	0.91[ASN][1000 genomes]
rs58954149	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59472119	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59861720	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60953279	0.91[ASN][1000 genomes]
rs61281789	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61510566	0.89[ASN][1000 genomes]
rs61612119	0.85[ASN][1000 genomes]
rs61749574	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6573758	0.86[ASN][1000 genomes]
rs6573760	0.87[ASN][1000 genomes]
rs6573763	0.90[ASN][1000 genomes]
rs6573764	0.91[ASN][1000 genomes]
rs6573769	0.98[EUR][1000 genomes]
rs66851210	0.95[EUR][1000 genomes]
rs67470433	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67968914	0.98[EUR][1000 genomes]
rs68002629	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140287	0.91[ASN][1000 genomes]
rs7144928	0.87[ASN][1000 genomes]
rs7149535	0.91[ASN][1000 genomes]
rs7150934	0.83[ASN][1000 genomes]
rs7151684	0.90[ASN][1000 genomes]
rs7152903	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7153965	0.86[ASN][1000 genomes]
rs7156441	0.83[ASN][1000 genomes]
rs7158743	0.87[ASN][1000 genomes]
rs7158751	0.86[ASN][1000 genomes]
rs7160238	0.86[ASN][1000 genomes]
rs73276994	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73279028	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73280932	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73280967	0.91[ASN][1000 genomes]
rs73282706	0.88[ASN][1000 genomes]
rs73282707	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282711	0.87[ASN][1000 genomes]
rs73282717	0.87[ASN][1000 genomes]
rs73282734	0.85[ASN][1000 genomes]
rs73282746	0.87[ASN][1000 genomes]
rs73282766	0.85[ASN][1000 genomes]
rs73282772	0.86[ASN][1000 genomes]
rs73282775	0.86[ASN][1000 genomes]
rs73282776	0.86[ASN][1000 genomes]
rs73282798	0.86[ASN][1000 genomes]
rs73284805	0.82[ASN][1000 genomes]
rs73284810	0.86[ASN][1000 genomes]
rs73284812	0.85[ASN][1000 genomes]
rs8003669	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8004148	0.88[ASN][1000 genomes]
rs8004488	0.86[ASN][1000 genomes]
rs8006042	0.98[EUR][1000 genomes]
rs8006391	0.83[ASN][1000 genomes]
rs8006519	0.83[ASN][1000 genomes]
rs8007033	0.84[ASN][1000 genomes]
rs8007866	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8008155	0.90[ASN][1000 genomes]
rs8008236	0.91[ASN][1000 genomes]
rs8008619	0.83[ASN][1000 genomes]
rs8008724	0.84[ASN][1000 genomes]
rs8009318	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8014104	0.89[ASN][1000 genomes]
rs8014259	0.89[ASN][1000 genomes]
rs8014966	0.86[ASN][1000 genomes]
rs8015302	0.85[ASN][1000 genomes]
rs8015641	0.98[EUR][1000 genomes]
rs8016024	0.89[EUR][1000 genomes]
rs8016037	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8016623	0.82[ASN][1000 genomes]
rs8017301	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8018623	0.82[ASN][1000 genomes]
rs8018738	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8019109	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019398	0.82[ASN][1000 genomes]
rs8020720	0.86[ASN][1000 genomes]
rs8020850	0.98[EUR][1000 genomes]
rs8021227	0.84[ASN][1000 genomes]
rs8021896	0.89[ASN][1000 genomes]
rs8021992	0.84[AMR][1000 genomes]
rs9323496	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs960797	1.00[EUR][1000 genomes]
rs9743911	0.91[ASN][1000 genomes]
rs9743912	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61024303	ATP6V1D	cis	Thyroid	GTEx
rs61024303	EIF2S1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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