Variant report

Variant	rs10139684
Chromosome Location	chr14:67860240-67860241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67859950..67861959-chr14:67870386..67872536,2	MCF-7	breast:

Extended variants
information (count: 237 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:230)

rs_ID	r²[population]
rs10129185	0.81[AMR][1000 genomes]
rs10129779	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10130796	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10131175	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10131212	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10135163	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10135498	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10135727	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10135903	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10136710	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10137026	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10137557	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10138755	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10138824	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10138932	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10139015	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10139585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139953	0.88[AMR][1000 genomes]
rs10140817	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10141180	0.81[AMR][1000 genomes]
rs10141879	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10143251	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143916	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10144090	0.80[EUR][1000 genomes]
rs10144218	0.83[ASN][1000 genomes]
rs10144401	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10144417	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10144774	0.81[AMR][1000 genomes]
rs10145586	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10145744	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10146663	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10146722	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10147640	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10147852	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10150902	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10151464	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10152002	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1044750	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1045060	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10459453	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10459529	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10459530	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10459531	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1073604	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1073606	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1073607	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10873200	0.81[ASN][1000 genomes]
rs1113973	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11158655	0.81[ASN][1000 genomes]
rs11158658	0.84[ASN][1000 genomes]
rs12323494	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12323793	0.80[EUR][1000 genomes]
rs12323911	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12586402	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12586552	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12586609	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12587679	0.90[AMR][1000 genomes]
rs12588355	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12588388	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12588478	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12589091	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12589218	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12589325	0.85[ASN][1000 genomes]
rs12589606	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12589671	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12589983	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12590065	0.81[AMR][1000 genomes]
rs12590952	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1318914	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13379142	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13379368	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1473733	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1475127	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1475128	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1475129	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1535489	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1535490	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1535491	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1536271	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1536272	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1536273	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1555853	0.92[ASN][1000 genomes]
rs17093616	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104106	0.81[ASN][1000 genomes]
rs17104109	0.80[ASN][1000 genomes]
rs17104188	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17104223	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104224	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17248456	0.80[EUR][1000 genomes]
rs17248526	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17248567	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17248616	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17248714	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17564263	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17836683	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17836702	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1885589	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1918484	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1980817	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025208	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2025209	0.80[EUR][1000 genomes]
rs2031563	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057396	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2146229	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146230	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2236333	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274335	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274336	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2274338	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2296560	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296562	0.85[AMR][1000 genomes]
rs2296563	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28370351	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28401319	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28405138	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28411190	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28422832	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28424592	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28441403	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28456209	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28458235	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28472807	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28522593	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28522922	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28524846	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28558916	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28562402	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28584286	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28607485	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28617290	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28668536	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28706091	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28866617	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3759755	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784081	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3784085	0.81[AMR][1000 genomes]
rs3809387	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3818467	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3818468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825722	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4058254	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4058266	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs45612334	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56918786	0.82[AMR][1000 genomes]
rs57025434	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57234033	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57266997	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57782535	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58257525	0.81[AMR][1000 genomes]
rs58287888	0.82[AMR][1000 genomes]
rs58809332	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58954149	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60953279	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61024303	0.81[ASN][1000 genomes]
rs61281789	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61510566	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61749574	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573763	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6573764	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573769	0.81[AMR][1000 genomes]
rs66851210	0.81[AMR][1000 genomes]
rs67968914	0.81[AMR][1000 genomes]
rs7140287	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7144928	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7149535	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7151684	0.82[ASN][1000 genomes]
rs7152903	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153350	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7153725	0.85[AMR][1000 genomes]
rs7153965	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7156441	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7157211	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7157704	0.81[AMR][1000 genomes]
rs7158743	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7158751	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7160238	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72476727	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73279028	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73280932	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73280967	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73282706	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73282711	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73282717	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73282734	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73282746	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73282766	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73282772	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73282775	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73282776	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73282798	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73284805	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73284810	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73284812	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8003669	0.80[EUR][1000 genomes]
rs8004332	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8004864	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8005756	0.85[AMR][1000 genomes]
rs8005876	0.85[AMR][1000 genomes]
rs8005900	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006042	0.81[AMR][1000 genomes]
rs8006391	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8006519	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8007033	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007618	0.92[ASN][1000 genomes]
rs8008155	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8008236	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8008443	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8008619	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8008724	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009318	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8014104	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8014259	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8014871	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8014966	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8015302	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8015641	0.81[AMR][1000 genomes]
rs8016024	0.81[AMR][1000 genomes]
rs8016037	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8016623	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8017301	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8018623	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8018738	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8019398	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8020720	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8020850	0.81[AMR][1000 genomes]
rs8021227	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8021621	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8021896	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9323496	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9743911	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv1054389	chr14:67804987-67922598	Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv542121	chr14:67804987-67922598	Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10139684	ATP6V1D	cis	Thyroid	GTEx
rs10139684	EIF2S1	cis	multi-tissue	Pritchard

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67831200-67864600	Strong transcription	Duodenum Mucosa	Duodenum
2	chr14:67835200-67863400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:67837600-67860800	Strong transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:67839600-67862400	Strong transcription	Fetal Intestine Large	intestine
5	chr14:67845000-67864800	Strong transcription	Hela-S3	cervix
6	chr14:67846000-67876200	Weak transcription	Stomach Mucosa	stomach
7	chr14:67849200-67860600	Strong transcription	Fetal Stomach	stomach
8	chr14:67849600-67864400	Weak transcription	Gastric	stomach
9	chr14:67850000-67862200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:67850200-67878400	Weak transcription	Lung	lung
11	chr14:67850600-67862400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:67851000-67863200	Weak transcription	Fetal Lung	lung
13	chr14:67852200-67862400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:67852200-67863200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:67852400-67862400	Weak transcription	HSMMtube	muscle
16	chr14:67852600-67862000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:67852800-67863200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:67852800-67865800	Strong transcription	HMEC	breast
19	chr14:67853200-67862600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:67853800-67862800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr14:67853800-67864600	Strong transcription	Fetal Intestine Small	intestine
22	chr14:67854000-67861600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:67854000-67862400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:67854000-67863000	Weak transcription	HSMM	muscle
25	chr14:67854200-67861800	Weak transcription	HUVEC	blood vessel
26	chr14:67854200-67862600	Weak transcription	NH-A	brain
27	chr14:67854200-67864400	Weak transcription	Left Ventricle	heart
28	chr14:67854200-67872000	Weak transcription	Small Intestine	intestine
29	chr14:67854400-67863200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:67854600-67862600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:67855200-67861800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:67855200-67863200	Weak transcription	A549	lung
33	chr14:67855200-67867400	Strong transcription	NHEK	skin
34	chr14:67855200-67875400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:67856000-67861200	Enhancers	Fetal Thymus	thymus
36	chr14:67857000-67862000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr14:67857000-67862200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr14:67858600-67867400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:67858800-67861200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr14:67859200-67861200	Weak transcription	Fetal Heart	heart
41	chr14:67859600-67876600	Weak transcription	Esophagus	oesophagus
42	chr14:67859800-67861800	Weak transcription	Pancreas	Pancrea
43	chr14:67859800-67862000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr14:67859800-67862200	Weak transcription	Spleen	Spleen
45	chr14:67859800-67866600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr14:67860000-67861800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:67860000-67862000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:67860000-67862000	Weak transcription	HepG2	liver
49	chr14:67860000-67863000	Weak transcription	Placenta	Placenta
50	chr14:67860000-67863200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links