Variant report

Variant	rs10139164
Chromosome Location	chr14:96987437-96987438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:96985630..96987652-chr14:97013134..97015914,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000090060	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10136266	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10136277	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10140247	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10143834	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10144704	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10467873	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11160341	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11160344	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11621566	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11621778	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11623142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11625090	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11627288	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11848720	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11848778	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12147439	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13329034	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13379390	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1484251	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17094149	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2274795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28718054	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28738720	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2887550	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4514608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56184178	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56960368	0.84[ASN][1000 genomes]
rs58112821	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60920648	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61435932	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61570427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66881740	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7142806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146883	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7160148	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8013517	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs965950	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3442210	chr14:96878392-97038700	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv1802671	chr14:96942352-97035680	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1052499	chr14:96974524-97034805	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv1793036	chr14:96983291-97023059	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96970600-96987800	Weak transcription	Fetal Stomach	stomach
2	chr14:96970600-96990600	Weak transcription	NH-A	brain
3	chr14:96970600-96991200	Weak transcription	Fetal Kidney	kidney
4	chr14:96970800-96988400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:96971600-96989800	Weak transcription	NHLF	lung
6	chr14:96971800-96990800	Weak transcription	HMEC	breast
7	chr14:96971800-96991000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:96972200-96987800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:96972200-96988200	Weak transcription	Colonic Mucosa	Colon
10	chr14:96972400-96987800	Weak transcription	Esophagus	oesophagus
11	chr14:96972400-96987800	Weak transcription	Spleen	Spleen
12	chr14:96974600-96987800	Weak transcription	Gastric	stomach
13	chr14:96974600-96987800	Weak transcription	Lung	lung
14	chr14:96975000-96992400	Weak transcription	K562	blood
15	chr14:96975400-96989200	Weak transcription	Hela-S3	cervix
16	chr14:96975600-96987800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:96975600-96992200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:96976200-96988000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:96976200-96992400	Weak transcription	NHEK	skin
20	chr14:96977000-96992600	Weak transcription	Fetal Brain Male	brain
21	chr14:96977600-96987800	Weak transcription	Dnd41	blood
22	chr14:96977600-96988000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:96978000-97019400	Weak transcription	Aorta	Aorta
24	chr14:96979400-96987800	Weak transcription	Brain Germinal Matrix	brain
25	chr14:96979400-96988000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:96979400-96988800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:96979600-96987800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:96979600-96987800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:96979600-96987800	Weak transcription	Thymus	Thymus
30	chr14:96979600-97000200	Weak transcription	Fetal Heart	heart
31	chr14:96979600-97022400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:96979800-96987800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:96979800-96987800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:96979800-96987800	Weak transcription	Pancreas	Pancrea
35	chr14:96979800-97019200	Weak transcription	Small Intestine	intestine
36	chr14:96980800-97020600	Weak transcription	Stomach Mucosa	stomach
37	chr14:96981200-96998400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr14:96981400-96987800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:96981400-96987800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr14:96982000-96988000	Weak transcription	Fetal Brain Female	brain
41	chr14:96982000-96988800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr14:96982000-96991000	Weak transcription	HUVEC	blood vessel
43	chr14:96982000-96991600	Weak transcription	Brain Anterior Caudate	brain
44	chr14:96982000-97031400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr14:96982200-96990600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr14:96982400-96987800	Weak transcription	Brain Angular Gyrus	brain
47	chr14:96982400-96987800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:96982400-96988200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr14:96982400-96988600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:96982400-96990800	Weak transcription	Brain Inferior Temporal Lobe	brain

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