Variant report

Variant	rs10139165
Chromosome Location	chr14:69453626-69453627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69443728..69448549-chr14:69453404..69457507,10	MCF-7	breast:
2	chr14:69444480..69448672-chr14:69452065..69455557,6	K562	blood:
3	chr14:69444412..69449535-chr14:69450683..69455557,7	K562	blood:
4	chr14:69452392..69454117-chr14:69457524..69459973,2	K562	blood:

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11628549	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628773	0.95[EUR][1000 genomes]
rs17835996	1.00[ASN][1000 genomes]
rs1884631	0.83[ASN][1000 genomes]
rs1950712	0.83[ASN][1000 genomes]
rs28561965	0.93[EUR][1000 genomes]
rs2877521	0.83[ASN][1000 genomes]
rs2877522	0.83[ASN][1000 genomes]
rs2877523	0.83[ASN][1000 genomes]
rs3809393	1.00[ASN][1000 genomes]
rs60900044	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69447400-69454400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69448400-69454400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:69448800-69454000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:69449000-69454600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:69449200-69454400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:69449200-69454400	Weak transcription	NHEK	skin
8	chr14:69449200-69458400	Weak transcription	HUVEC	blood vessel
9	chr14:69449400-69454000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:69449400-69454400	Weak transcription	HMEC	breast
11	chr14:69449400-69454600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:69450000-69454200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:69450000-69454400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:69450000-69454400	Weak transcription	Pancreas	Pancrea
15	chr14:69450000-69454600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:69450000-69455400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:69450200-69455200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:69451000-69454400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:69453000-69454400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:69453000-69454400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr14:69453000-69454600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:69453000-69454600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr14:69453000-69454800	Enhancers	K562	blood
24	chr14:69453200-69456400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:69453400-69453800	Enhancers	Colon Smooth Muscle	Colon
26	chr14:69453400-69454000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr14:69453400-69454400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:69453400-69454400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:69453400-69460600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links