Variant report

Variant	rs17835996
Chromosome Location	chr14:69464829-69464830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10139165	1.00[ASN][1000 genomes]
rs11628549	1.00[ASN][1000 genomes]
rs1884631	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1950712	1.00[CEU][hapmap];0.83[GIH][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2877521	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2877522	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2877523	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3809393	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs60900044	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69455600-69465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:69456000-69471200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69462800-69470800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:69464000-69465400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:69464200-69465000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:69464200-69465400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:69464400-69465000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69464400-69465000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:69464400-69465200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:69464400-69465200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:69464400-69465400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:69464600-69465000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:69464600-69465000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:69464600-69465000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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