Variant report

Variant	rs10139843
Chromosome Location	chr14:70519940-70519941
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10129546	0.87[CEU][hapmap]
rs10134965	1.00[YRI][hapmap]
rs10136807	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136848	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138444	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139405	0.87[CEU][hapmap]
rs10146698	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12885683	1.00[YRI][hapmap]
rs13379247	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459704	1.00[YRI][hapmap]
rs17175109	1.00[YRI][hapmap]
rs28559680	0.81[AFR][1000 genomes]
rs28722118	0.81[AFR][1000 genomes]
rs34806603	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs45554836	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67051826	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70512800-70535600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70513200-70520000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70514600-70531200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:70515800-70520000	Weak transcription	Fetal Brain Female	brain
5	chr14:70517000-70525200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:70517800-70526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:70518000-70526200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:70518200-70524600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:70519000-70525400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:70519200-70520000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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