Variant report

Variant	rs10129546
Chromosome Location	chr14:70546515-70546516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10130363	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136807	0.87[CEU][hapmap]
rs10136848	0.87[CEU][hapmap]
rs10138444	0.87[CEU][hapmap]
rs10138883	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10139405	1.00[CEU][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139843	0.87[CEU][hapmap]
rs10142162	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10146698	0.87[CEU][hapmap]
rs10147004	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13379247	0.87[CEU][hapmap]
rs28362750	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28413804	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28435585	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28472318	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28640248	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59764487	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72729840	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72729845	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72729857	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729859	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729860	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729887	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72729889	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70526400-70549000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70530600-70548800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70536800-70552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:70539000-70552200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:70545000-70547800	Enhancers	Fetal Brain Male	brain
6	chr14:70546400-70546800	Active TSS	Fetal Brain Female	brain
7	chr14:70546400-70547200	Enhancers	Pancreas	Pancrea

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